DRSC/TRiP Functional Genomics Resources

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Protein Alignment toy and pax6l

DIOPT Version :10

Sequence 1:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_002938577.1 Gene:pax6l / 100485335 XenbaseID:XB-GENE-29077751 Length:281 Species:Xenopus tropicalis


Alignment Length:380 Identity:143/380 - (37%)
Similarity:184/380 - (48%) Gaps:114/380 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 EKLRMFNGQTGGWA----WYPSNTTTAHLTLPPAASVVTSPANLSGQADRDDVQKRELQFSVEVS 232
            :|:||.|.|.|.|.    ||..|             :||..:|.:                  :.
 Frog     8 QKIRMLNIQNGAWGSRQDWYQDN-------------IVTGQSNTT------------------ID 41

  Fly   233 HTNSHDSTSDGNSEHNSSGD--EDSQMRLRLKRKLQRNRTSFSNEQIDSLEKEFERTHYPDVFAR 295
            .....||:.|...:..::.|  ::||:||:||||||||||||:.|||::||||||||||||||||
 Frog    42 SCQQLDSSLDSEHQPGAANDDLDESQIRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFAR 106

  Fly   296 ERLADKIGLPEARIQVWFSNRRAKWRREEKMRTQRRSADTVDGSGRTSTANNPSGTTASSSVATS 360
            ||||.||.||||||||||||||||||||||:|.|||.|                          |
 Frog   107 ERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQA--------------------------S 145

  Fly   361 NNSTPGIVNSAINVAERTSSALVSNSLPEASNGPTVLG-GEANTTHTSSESPPLQPAAPRLPLNS 424
            |.|:...:||:.       |:.|..|:|:.||..::|| .||..|::....|||    |..    
 Frog   146 NTSSHLSINSSF-------SSSVYQSIPQPSNSGSMLGRSEAAITNSYGSLPPL----PSF---- 195

  Fly   425 GFNTMYSSIP-QPIATMAENYNSSLGSMTPSCLQQRDAYPYMFHDPLSLGSPYVSAHHRNTACNP 488
               ||.:::| ||||:....|:..:.|.....::..|||.          .|.:..|..|.....
 Frog   196 ---TMPNNLPIQPIASQTSTYSCMISSSPSVSVRSYDAYT----------PPQLQTHMSNQNLGS 247

  Fly   489 SAAHQQPPQHGVYTNSSPMPSSNTGVISAGVSVPVQISTQNVSDLTGSNYWPRLQ 543
            .|                  ||:||:||.|||||||:...: .|||  .||||||
 Frog   248 GA------------------SSSTGLISPGVSVPVQVPGGD-PDLT--QYWPRLQ 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toyNP_001368990.1 PAX 29..153 CDD:128645
COG5576 <253..368 CDD:227863 71/114 (62%)
Homeodomain 267..322 CDD:459649 48/54 (89%)
pax6lXP_002938577.1 Homeodomain 78..133 CDD:459649 48/54 (89%)
Blue background indicates that the domain is not in the aligned region.

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