DRSC/TRiP Functional Genomics Resources

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Protein Alignment PlexA and pkhd1l1.1

DIOPT Version :9

Sequence 1:NP_524637.2 Gene:PlexA / 43832 FlyBaseID:FBgn0025741 Length:1945 Species:Drosophila melanogaster
Sequence 2:NP_001305057.1 Gene:pkhd1l1.1 / 569261 ZFINID:ZDB-GENE-060503-475 Length:4208 Species:Danio rerio


Alignment Length:1543 Identity:299/1543 - (19%)
Similarity:476/1543 - (30%) Gaps:540/1543 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 TITNVAAFDTKLNHLLVDTITGRVFVGGVNRLYQLSPDLELSETVKTGPQNDSVECSILDCPLNA 128
            |:|.::..:...:...|.||||..|.||             :.|||||    .||||||      
Zfish  1056 TVTGISPTEGSSSLGTVLTITGSGFNGG-------------NVTVKTG----DVECSIL------ 1097

  Fly   129 VRSPTDNYNKVLLIDRATSRLIAC--GSLFQGTCTVRNLQNVSIIEHEVPDAVVANDANSSTVAF 191
                           :.|:..|.|  |....|      :|.||:                   :|
Zfish  1098 ---------------QVTNTSITCQVGPASAG------VQPVSL-------------------SF 1122

  Fly   192 IAPGPPQHPVTNVMYVGVTYTNNSPYRSEIPAVASRSLEKTKMFQIASSAVTTGTRTFINSYARE 256
            ...|..::|            |||            |...|.:|.:.|...|:|      |.|..
Zfish  1123 SLLGNARYP------------NNS------------SFNFTHLFGVTSINPTSG------SVAGG 1157

  Fly   257 TYFVNYVYGFSSERFSYFLTTQLKHSHHSSPKEYITKLVRICQEDSNYYSYTEIPVECI--SDAQ 319
            |......||||::                       ..|.|..:..:........:.||  :.::
Zfish  1158 TVLTVSGYGFSND-----------------------AAVTIGTQPCSIVEVELFQLRCIVPAGSE 1199

  Fly   320 G-------GTKFNLVQAGFLGKPSSDLAQSLGISIQDDVLF-----AVFSKGEGNTP-------- 364
            |       ..|...:..|.....::..|....:|.|...:|     .:..|..|.||        
Zfish  1200 GEQTVTMTAAKMTAIFNGSFTYSNTMTALITSVSPQTTTVFGNRSLTILGKHFGATPNDISVLIG 1264

  Fly   365 ---------TNNSALC--------IYSLKSIRRKFMQNIKSCFNGSGMRGLDFISPSMPCVLTKL 412
                     ||.|..|        :|::         |::     .|.:|....||.   |.|.:
Zfish  1265 DAECELLQWTNESISCLLPTLPPAVYNV---------NVR-----VGNQGYPLTSPG---VNTTI 1312

  Fly   413 Q----------TIGEDFCGLDVNSPLGGETP-ITSVPVAMFNTKLTSVAATST------------ 454
            :          ::|..|.|..:.....|.:| |....|.:.:|:.|..||:..            
Zfish  1313 EYALEVTGFSPSVGSLFGGTTITIMGSGFSPDIQENNVTLGDTQCTVTAASDVQLECVTQSRDKT 1377

  Fly   455 -------------SGY-------------TVVFVGTSDGFLKKVVIESSSIANEYASFAVDLGSE 493
                         .||             |||:..::..|:..:.         |..|:|...|.
Zfish  1378 YTVTNQGVHPVYGQGYAWSPSALITSVGDTVVWRWSAPAFVPGLA---------YRVFSVSSPSS 1433

  Fly   494 INRD-----------------MQFDNQNLYIY-------VMSKTKVSKVKVFDCSDYKT------ 528
            .|.|                 .:|.:..:|.|       ...||....|.|....:...      
Zfish  1434 TNYDGTTFSSGDTQTANGFFAYRFTSPGVYYYSSGYIDSAKQKTLQGVVTVMPLEESTVELQVFV 1498

  Fly   529 ----CGDCLGARDPYCGWCSLENKCSPRSNC-QD-----DANDPLYWVSYKTGKCTTITSVVP-- 581
                ....||..:      |.:..|...||| ||     |.:|.||: |:.:....|:..:.|  
Zfish  1499 KGVQASVNLGQIN------SSDTDCMATSNCPQDQLIFNDTSDGLYF-SFTSCATPTVYDITPGY 1556

  Fly   582 ---HQLQRTTARTL-------ELIIDHLP-----QLKENLICAFTTEDKA-------LFTNATKK 624
               |.:........       |:.:..||     .....:.|..:.:.:|       |.......
Zfish  1557 GTTHDIINIRGSAFSNITCANEVKVGDLPCSVINSSSTEINCQLSPDSRAPVGVPLPLTVQVNNL 1621

  Fly   625 RNGVNCTTP-----RTDMLPQIE-----------------QGKHHFTAKLSVRTRNGP-DLVSTD 666
            .|.: .|.|     |..:||.::                 .|...|:.  ||...|.| .:||.|
Zfish  1622 GNAL-LTMPKEIDRRFVVLPVVDSIFPVVGSTTGSTRLLISGSGFFSG--SVMVANVPCKVVSFD 1683

  Fly   667 FTFFDCSTHSSCTRCVSSEFPCDWCVEAHRCTHDTAENCR---NDILVTGVSRIGPSYRSGPGFC 728
            ::...|.|..|..|      ..|..|..:..:...:.:|:   :|.:...||.:.||..||....
Zfish  1684 YSQMVCDTSPSIAR------SGDVTVYINSISSSCSSDCKFEYSDSITPQVSTVSPSSVSGNSTT 1742

  Fly   729 PTINATGDGS------------------------EVL---------------------------- 741
            .|:..:|.|:                        |||                            
Zfish  1743 VTVTGSGFGNNPADLMIFADNILLKGTQVNDSSIEVLAGALPAGTHTLKVVVMSKGLATGSATLT 1807

  Fly   742 -------------VAGGTSKSIKVKVHIIGQFIVQT-RFVCQF--------------NIEGRVTS 778
                         :||||...|.....:.|...|:. ..:|:.              ..||:| .
Zfish  1808 SIAQASINPTSGSIAGGTPLLITGNGFVAGNTTVKLGNSLCKILDVTADTVRCLTPPRAEGQV-Q 1871

  Fly   779 LNAQLLGDTIYCDSMEFQYT-SRSPNLTATFAVIWGGSKPLDNPHNIHVVIYRCREMADSCGICL 842
            :|.::. |.:| ....|.|: .::||:|:.        .|...|....:.:.......||..:.|
Zfish  1872 VNIKVF-DVVY-PPQNFNYSKQQTPNITSV--------TPKTGPVGTQITVSGSGFGTDSAVVSL 1926

  Fly   843 ALSEKYNCGWCSSTNT---CEVEEQCNK------NKEGKTDWLNRSEICPNPEIHTFQPKTGPWE 898
            .: :...|...|.|:|   |.|.|....      |.:.|...|.:|.......:....|..|.:.
Zfish  1927 KI-DSVACNISSITDTQLLCTVGEHAGGTFPVLFNHQVKGYALTQSVFKYELLLTGVTPNEGSYA 1990

  Fly   899 GGTNITIRGINLGKNYNDIYSGVRIAGINCMPFPQFYIDTKQIVCTV-DSPGEQMYRNGKIVVQI 962
            ||..:.|:|.....|    .:.|.|....|....|....| |:.|.| .:.|.:.::...::|..
Zfish  1991 GGAVVAIQGSGFDPN----ITKVLICNRECTVHLQDSTST-QLNCEVPPNNGSEAFQVCAVIVMN 2050

  Fly   963 GDYRGESKEDYEF---VDPKILDFNPKFGPTSGGTEIHITGKHLNAG-SRIQASINDHLPCKILS 1023
            |.........|.:   :.|.|.:..|:.|.|:|||.:.|||...::. |.|..:|...: |.|.|
Zfish  2051 GGDSVNLTSGYTYRSSLTPVISNVTPRRGGTAGGTRLTITGSGFSSNISEIAVTIAGSI-CDIQS 2114

  Fly  1024 TDSSQAICRTSASPGIIEGRLKMSFDN-GPREFNDYNFKYVLDPTVEHVSSGPS--GQIKVPKG- 1084
            .:.:|.||.|:|.|...|.::::...| |....::.:|.|:      .|.|.|.  |.:..|:. 
Zfish  2115 ANETQIICVTNAGPKSQETQVRVQLGNRGIARMDNASFFYI------DVWSSPYTWGGLSPPEEG 2173

  Fly  1085 ----IPAGGIRISVTGTQF-----------------TSIQNPNIYVVYNGEMYASPCRVQSDTEM 1128
                |.||...:..|.|..                 ..:|..||.:...|.:       |..||.
Zfish  2174 SFAVITAGQTILLDTSTPILKMLLIQGGRLIFDEADIELQAENILITDGGAL-------QIGTEQ 2231

  Fly  1129 ECASP-----VVDVDSHVIEAERPILLEYGFLMDNVLRV-QNLSKVHNNHFELYPNPEYFIFEER 1187
               .|     ::.:..|:...|.|:   ||   ...|.| |.:..:|.     .|.|..:....:
Zfish  2232 ---MPFQHKAIITLHGHLRSQELPV---YG---TKTLGVRQGVLDLHG-----IPVPMTWTRLSQ 2282

  Fly  1188 VKYFKSEYLTINGRNLDRACKESDVEVKIG----------NGFCNITSLSR--QQLTCRPPSEAT 1240
            .....|..||:    :|....:...|:.|.          |....|.|:|.  :.||...|    
Zfish  2283 TAQGGSSTLTL----MDAVTWKIGDEIVIASTGHRHSQAENELKRIASVSADGRTLTLTEP---- 2339

  Fly  1241 ATKSMNGPEVIVRIGTSLEYR--IGILSYESSNIIL------DWGENV 1280
            .|.:..|..|.:..||..|.|  :|:|   :.||::      :|.:.:
Zfish  2340 LTNTHLGVSVTLPDGTVFEARAEVGLL---TRNIVVRGSNNAEWNDQI 2384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PlexANP_524637.2 Sema_plexin_like 75..520 CDD:200497 102/558 (18%)
PSI 522..574 CDD:279745 14/67 (21%)
PSI 671..>699 CDD:279745 6/27 (22%)
PSI 830..883 CDD:279745 14/61 (23%)
IPT_plexin_repeat1 885..977 CDD:238585 19/95 (20%)
IPT_plexin_repeat2 978..1063 CDD:238584 27/86 (31%)
IPT 1078..1177 CDD:301692 23/126 (18%)
IPT_PCSR 1196..>1255 CDD:238337 15/70 (21%)
Plexin_cytopl 1353..1916 CDD:285529
pkhd1l1.1NP_001305057.1 IPT_PCSR 26..118 CDD:238337
IPT_PCSR 265..355 CDD:238337
PA14 <379..460 CDD:298777
IPT_PCSR 1055..1139 CDD:238337 36/169 (21%)
IPT_PCSR 1144..1221 CDD:238337 17/105 (16%)
TIG 1229..1300 CDD:280079 14/84 (17%)
IPT_PCSR 1317..>1373 CDD:238337 11/55 (20%)
Cupredoxin 1381..1484 CDD:302766 18/111 (16%)
IPT_PCSR 1547..1627 CDD:238337 10/80 (13%)
IPT_PCSR 1640..1722 CDD:238337 17/89 (19%)
TIG 1741..1807 CDD:280079 6/65 (9%)
IPT_PCSR 1813..1888 CDD:238337 15/77 (19%)
TIG 1894..1975 CDD:280079 19/89 (21%)
TIG 1979..2063 CDD:280079 19/88 (22%)
IPT_PCSR 2069..2156 CDD:238337 28/93 (30%)
G8 2163..2281 CDD:287171 26/138 (19%)
G8 3024..3151 CDD:287171
Beta_helix 3308..>3414 CDD:289971
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3610
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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