DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PlexA and Plxnd1

DIOPT Version :9

Sequence 1:NP_524637.2 Gene:PlexA / 43832 FlyBaseID:FBgn0025741 Length:1945 Species:Drosophila melanogaster
Sequence 2:NP_001381981.1 Gene:Plxnd1 / 312652 RGDID:1310796 Length:1996 Species:Rattus norvegicus


Alignment Length:2062 Identity:656/2062 - (31%)
Similarity:988/2062 - (47%) Gaps:394/2062 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 TKLNHLLVDTITGRVFVGGVNRLYQLS-PDLELSETVKTGPQNDSVECSILDCPLNAVRSP---T 133
            |..|:..:|...|.|::..|||||||| .:|.|......||..||..|.....|..:...|   |
  Rat   130 TPTNNFALDGTAGTVYLAAVNRLYQLSGANLSLEAEATVGPVPDSPLCHAPQLPQASCEHPRRLT 194

  Fly   134 DNYNKVLLIDRATSRLIACGSLFQGTCTVRNLQNVSIIEHEVPDA---------------VVAND 183
            |||||:|.:|.....::||||::||.|.:|...|:|.:....|.|               |.||.
  Rat   195 DNYNKILQLDPGQGLVVACGSIYQGLCQLRRRGNISALAVSFPPAAPTAEPVTVFPSMLNVAANH 259

  Fly   184 ANSSTVAFIAPGPPQHPVTNVMYVGVTYT---------NNS--PYRSE-IPAVASRSLEK----T 232
            .|:|||..:.| |......:.:.||.|||         |.|  .:|.| .|.::.|||:.    .
  Rat   260 PNASTVGLVLP-PASGTGGSRLLVGATYTGYGSAFFPRNRSLEDHRFENTPEISIRSLDARGDLA 323

  Fly   233 KMFQIASSAVTTGTRTF-----------INSYARETYFVNYVYGF--------SSERFSYF-LTT 277
            |:|            ||           |...|:|.:.:.:|..|        |:..::|. |.:
  Rat   324 KLF------------TFDLNPSDDNILKIKQGAKEQHKLGFVRAFLHPAVPPHSAHPYAYLALNS 376

  Fly   278 QLKHSHHSSPKEYITKLVRICQE-----DSNYY--SYTEIPVECISDAQGGTKFNLVQAGFLGKP 335
            :.:.....|....:  |.|||..     |:...  ||.::.::|...|..|..::.:.:.|..: 
  Rat   377 EARAGDKDSQARSL--LARICLPRGAGGDAKKLTESYIQLGLQCAGGAGRGDLYSRLVSVFPAR- 438

  Fly   336 SSDLAQSLGISIQDDVLFAVFSKGEGNTPTNN--SALCIYSLKSIRRKFMQNIKSCF-------- 390
                          :..||||.:.:|.....|  :|||.:....::........:||        
  Rat   439 --------------EQFFAVFERPQGTPGARNAPAALCAFRFADVQAAIRAARTACFVEPAPDVV 489

  Fly   391 -------NGSG-----MRGLDFISPSMPCVLTKLQTIGEDFCGLDVNSPLGGETPITSVPVAMFN 443
                   .|:|     .|.:......:.|....||            .||....|:.:.||  |.
  Rat   490 AVLDSVVQGTGPACESKRNIQLQPEQLDCGAAHLQ------------HPLTILQPLRASPV--FR 540

  Fly   444 TK-LTSVAATSTSGYTVVFVGTSDGFLKKVVIESSSIANEYASFAVDLGSEINRDMQFDNQNL-Y 506
            .. ||:||..:.:.||.||:||:.|.|.|:.:..|..........|..|..::..||||..:. |
  Rat   541 APGLTAVAVANANNYTAVFLGTATGRLLKISLNESMQVVSRRVLTVAYGEPVHHVMQFDPMDPGY 605

  Fly   507 IYVMSKTKVSKVKVFDCSDYKTCGDCLGARDPYCGWCSLENKCSPRSNCQDDAND--PLYWVSYK 569
            :|:|:..::::|||..|..:.|||||:||.|.|||||:||.:|:.:.:|   ||.  |.:|.|..
  Rat   606 LYLMTSHQMARVKVAACEVHSTCGDCVGAADAYCGWCTLETRCTFKQDC---ANSSLPHFWTSAS 667

  Fly   570 TG--KCTTITSVVPHQL--QRTTARTLELIIDHLPQLK-ENLICAFTTEDKALFTNATKKRNGVN 629
            .|  :|..:| |:|.::  .|.....:..|...||.|. ..:.|.:              .|||.
  Rat   668 EGPSRCPAMT-VLPSEIDVHRDYTGMILQISGSLPSLSGMEMACDY--------------GNGVR 717

  Fly   630 CTT-----------------PRTDMLPQIEQGKHHFTAKLSVRTRNGPDLVSTDFTFFDCS---- 673
            ...                 ||. ..|....|:.|.|.::|||.: |.::||.:||.:|||    
  Rat   718 TVARVPGPAYGHQIAYCNLLPRA-QFPPFPAGQDHVTVEMSVRVK-GHNIVSANFTIYDCSRIGQ 780

  Fly   674 --THSSCTRCVSSEFPCDWCVEAHRCTHDTAENCRNDILVTGVSRIGPSYRSGPGFCPTI----- 731
              .|::||.|:|:::||.||::.|.|..:.: .|::          .|:..| |..||.|     
  Rat   781 VYPHTACTSCLSTQWPCSWCIQLHSCVSNQS-RCQD----------SPNPTS-PQDCPQIVPSPL 833

  Fly   732 --NATGDGSEVLVAGGTSKSIKVKVHIIGQFIVQTRFVCQFNIEGRVTSLNAQLLGDTIYCDSME 794
              ..||...::||.  .:|:         .|...|...|.|.:|....::.|.  ...:.|:.:.
  Rat   834 APVPTGGSQDILVP--LTKA---------AFFHGTSLQCSFGLEENFEAVWAN--DSLVRCNQVV 885

  Fly   795 FQYTSRSPNLTATFAVIWGGSKPLDNPHNIHVVIYRCREMADSCGICLALSE-KYNCGWCSSTNT 858
            ...|.:|.....:..:.....:.||:|:.:.||:|.|...:..|..||...: .:.|.|   .:.
  Rat   886 LHTTQKSQVFPLSLKLKGPPDRFLDSPNPMTVVVYNCAMGSPDCSQCLGREDLGHLCVW---NDG 947

  Fly   859 CEVEEQCNKNKEGKTDWLNRSEICPNPEIHTFQPKTGPWEGGTNITIRGINLGKNYNDIYSGVRI 923
            |.:        .|....|  |..||.|||...:|.:||..|||.:||||.|||:..:|:..||.|
  Rat   948 CRL--------RGPLQPL--SGTCPAPEIRAIEPLSGPLNGGTLLTIRGKNLGRRLSDVAHGVWI 1002

  Fly   924 AGINCMPFPQFYIDTKQIVC-TVDSPGEQMYRNGKIVVQIGDYRGESKEDYEFVDPKILDFNPKF 987
            ..:.|.|....|..:::||| |..:||.   .:..:.|.:.. .|.|:|.:.:|.|::....|..
  Rat  1003 GNVACEPLADRYTVSEEIVCATGPAPGA---FSDVVTVNVSK-EGRSREQFSYVLPRVHSLEPSM 1063

  Fly   988 GPTSGGTEIHITGKHLNAGSRIQASINDHLPCKILSTDSSQAICR----TSASP----------G 1038
            ||.:|||.|.|.|..||.||.:|..:||..||..|:..::...|.    |..||          |
  Rat  1064 GPKAGGTRITIHGSDLNVGSMLQVLVNDTDPCTDLTRTATSITCTVPRGTLPSPVPVCVRFESRG 1128

  Fly  1039 IIEGRLKMSFDNGPREFNDYNFKYVLDPTVEHVSSGPSGQIKVPKGIP-AGGIRISVTGTQFTSI 1102
            .:.|.|              .|.|:.:|.:..:|.|.|         | :||..|:|.|.:|..:
  Rat  1129 CVHGNL--------------TFWYMQNPVITAISPGRS---------PVSGGRTITVAGERFHMV 1170

  Fly  1103 QNPNIYVVYNGEMYASP--CRVQSDTEMECASP------------VVDVDSHVIEAERPILLEYG 1153
            ||.::.|.:.|.   .|  |:|.:.|.:.|.||            .::..::..||...:|    
  Rat  1171 QNVSMAVHHIGR---EPTFCKVLNSTLIICPSPGALSNASAPVDFFINGRAYADEAAEELL---- 1228

  Fly  1154 FLMDNVLRVQNLSKVHNNHFELYPNPEYFIF--EERVKYFKSEYLT-INGRNLDRACKES-DVEV 1214
                :....|..|:.   ..:..|||::...  |:.:|:...|.|| :..:..|....|| :..:
  Rat  1229 ----DPAEAQRGSRF---RLDYLPNPQFSTAKREKWIKHHPGEPLTLVIHKEQDSLGLESHEYHI 1286

  Fly  1215 KIGNGFCNITSLSRQQLTCRPPSEATATKSMNGPEVIVRIGTSLEYRIGILSYESSNIILDWGEN 1279
            |||...|:|..:|.:.:.| ..:|:..|.....|..|         ::|..:...:.:.|...|.
  Rat  1287 KIGQVSCDIQIISDRVIHC-SVNESLGTAEGQLPITI---------QVGNFNQTIATLQLGGSET 1341

  Fly  1280 VIFAVIATIVILLLIFVALLVAYKKKSSESSRVLRNMQEQMDILELRVAAECKEAFAELQTEMTD 1344
            .|...|....:|||:.|..|..:..||..:.|..:....||:.:|.::..|.::.||||||:|||
  Rat  1342 AIVVSIVICSVLLLLSVVALFVFCTKSRRAERYWQKTLLQMEEMESQIREEIRKGFAELQTDMTD 1406

  Fly  1345 LTGDLT-SGGIPFLDYRSYAMKILFPN----HEDHIVL---------------------QWERPE 1383
            ||.:|. |.|||||:|:.:..:..||.    :|:..||                     :|..||
  Rat  1407 LTKELNRSQGIPFLEYKHFVTRTFFPKCSSLYEERYVLPSKTLNSQGGSPPQETHPLLGEWNIPE 1471

  Fly  1384 LLR--KEKGLRIFGQLIMNKTFLLLFIRTLESNRYFSMRERVNVASLIMVTLQSKLEYCTDILKT 1446
            ..|  .|:|:.:|..|:.||.||::|:..||..:.|::|:|.::|||:.:.|..||||.|.|:|.
  Rat  1472 HCRPSMEEGISLFSSLLNNKHFLIVFVHALEQQKDFAVRDRCSLASLLTIALHGKLEYYTSIMKE 1536

  Fly  1447 LLGDLIEKCIEGKSHPKLLLRRTESVAEKMLSAWFTFLLYKFLKECAGEPLYMLFRAVKGQVDKG 1511
            ||.|||:  .....:|||:|||||||.||||:.|.:..:|..|:|..|||.::|..|:|.|::||
  Rat  1537 LLVDLID--ASAAKNPKLMLRRTESVVEKMLTNWMSICMYGCLRETVGEPFFLLLCAIKQQINKG 1599

  Fly  1512 PVDACTHEARYSLSEEKLIRQSIDFRPMNVYASIIQQPIFCNNLDMLPSHTENVSVKVLDCDTIG 1576
            .:||.|.:|||:|:||.|:|::|:.:|.|:            |:.......:::||:.:|.||:.
  Rat  1600 SIDAITGKARYTLNEEWLLRENIEAKPRNL------------NVSFQGCGMDSLSVRAMDTDTLT 1652

  Fly  1577 QVKEKCLETIYRNIPSSQRPRKDDLDLEWRTGATGRVILYDEDVTSKTESEWKKLNTLQHYNVPD 1641
            |||||.||...:|:|.||.||.:|:||||...:|...:|.|.|.||..|...||||||.||.:|:
  Rat  1653 QVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYVLRDLDDTSVVEDGRKKLNTLAHYKIPE 1717

  Fly  1642 GAGLSLVPKQSSIYNFSILSDKNEKSHKYETLNISKYTSSSPTFSRAGSPLNNDMHENGLRYWHL 1706
            ||.|::           .|:||.:.                 |..|.     .|:...  :|:||
  Rat  1718 GASLAM-----------SLTDKKDN-----------------TLGRV-----KDLDTE--KYFHL 1747

  Fly  1707 VKHHDSDMQ-KEGERVN---KLVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKY 1767
            |...|..:: |:..|.:   |::.||||||||:||||||||:||||:.|.|.  |....|||:||
  Rat  1748 VLPTDELVEPKKSHRQSHRKKVLPEIYLTRLLSTKGTLQKFLDDLFKAILSI--REDKPPLAVKY 1810

  Fly  1768 MFDFLDDQAQLHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFVFDIHKSNIVDSCLSVVAQTFMD 1832
            .||||::||:..||:||:.:|.||:||||||||||::|||.|||||.|::.:|:||||:||.|:|
  Rat  1811 FFDFLEEQAEKRGISDPDTLHIWKTNSLPLRFWVNILKNPQFVFDIEKTDHIDACLSVIAQAFID 1875

  Fly  1833 SCSTSDHRLGKDSPSSKLLYAKDIPEYRKWVDRYYRDIRDMSPISDQDMNAMLAEESRLHTTEFN 1897
            :||.||.:||||||::||||||:||||||.|.|||:.|:||:|:|:|:|||.||||||.:..|||
  Rat  1876 ACSISDLQLGKDSPTNKLLYAKEIPEYRKIVQRYYKQIQDMTPLSEQEMNAHLAEESRKYQNEFN 1940

  Fly  1898 TNCALHELYTYAVKYNEQLTVTLEEDEFSQKQRLAFKLEQVHNIMSS 1944
            ||.|:.|:|.||.:|..|:...||.:..:::.:|.:|.|||..:|.:
  Rat  1941 TNVAMAEIYKYAKRYRPQIMAALEANPTARRTQLQYKFEQVVALMEN 1987

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PlexANP_524637.2 Sema_plexin_like 75..520 CDD:200497 134/530 (25%)
PSI 522..574 CDD:279745 24/55 (44%)
PSI 671..>699 CDD:279745 14/33 (42%)
PSI 830..883 CDD:279745 10/53 (19%)
IPT_plexin_repeat1 885..977 CDD:238585 33/92 (36%)
IPT_plexin_repeat2 978..1063 CDD:238584 28/98 (29%)
IPT 1078..1177 CDD:301692 23/113 (20%)
IPT_PCSR 1196..>1255 CDD:238337 16/60 (27%)
Plexin_cytopl 1353..1916 CDD:285529 264/593 (45%)
Plxnd1NP_001381981.1 Sema_plexin_D1 122..620 CDD:200508 136/533 (26%)
PSI 622..674 CDD:396154 24/54 (44%)
TIG_plexin <700..773 CDD:407808 21/88 (24%)
PSI 784..826 CDD:214655 15/53 (28%)
IPT_plexin_repeat1 964..1052 CDD:238585 33/91 (36%)
IPT_plexin_repeat2 1054..1140 CDD:238584 29/99 (29%)
IPT_plexin_repeat3 1142..1245 CDD:238586 27/125 (22%)
Plexin_cytopl 1416..1959 CDD:400574 264/593 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D56043at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100269
Panther 1 1.100 - - O PTHR22625
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

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