DRSC/TRiP Functional Genomics Resources

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Protein Alignment ATPsynbeta and KDM5C

DIOPT Version :9

Sequence 1:NP_001259081.1 Gene:ATPsynbeta / 43829 FlyBaseID:FBgn0010217 Length:511 Species:Drosophila melanogaster
Sequence 2:NP_004178.2 Gene:KDM5C / 8242 HGNCID:11114 Length:1560 Species:Homo sapiens


Alignment Length:552 Identity:97/552 - (17%)
Similarity:163/552 - (29%) Gaps:222/552 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 DNLPPILNALEVDNRS-------PRLVLEV----AQHLGENTVRTIAMDGTE------------- 100
            |.||.:|:.|:|...|       .|:.|||    .:.|.|  :|.:..:..|             
Human   754 DELPAMLHKLKVRAESFDTWANKVRVALEVEDGRKRSLEE--LRALESEARERRFPNSELLQQLK 816

  Fly   101 --------------GLVRGQKVLDTGYPIRI--------------------PVGAETLGRIINVI 131
                          |||.||   :.| |.|:                    |.....:|.:..|:
Human   817 NCLSEAEACVSRALGLVSGQ---EAG-PHRVAGLQMTLTELRAFLDQMNNLPCAMHQIGDVKGVL 877

  Fly   132 GEPID------------------------ERGPIDTDKTAAIHAEAPEF--VQMSVEQEILVTGI 170
             |.::                        |||       ..:..|.||.  :|..|||...:..:
Human   878 -EQVEAYQAEAREALASLPSSPGLLQSLLERG-------RQLGVEVPEAQQLQRQVEQARWLDEV 934

  Fly   171 KVVDLLAPYAKGGKIG-----LFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLY 230
            |  ..|||.|:.|.:.     |..||.|..:..       |.||.........:.||..|...|.
Human   935 K--RTLAPSARRGTLAVMRGLLVAGASVAPSPA-------VDKAQAELQELLTIAERWEEKAHLC 990

  Fly   231 NEMIEGGVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFT 295
            .|                    .:...||.....:.            :|.:::.:.:.||....
Human   991 LE--------------------ARQKHPPATLEAII------------REAENIPVHLPNIQALK 1023

  Fly   296 QAGSEVSALLGRIPS-----------------AVGYQ-PTLATDMGSMQERITTT---------- 332
            :|.::..|.:..:..                 |||.. |....::..::.::.|.          
Human  1024 EALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKT 1088

  Fly   333 --KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI 395
              ||.|..::..:..|..|          |..|:|........|||:|.:           |..:
Human  1089 FLKKNSCYTLLEVLCPCAD----------AGSDSTKRSRWMEKELGLYKS-----------DTEL 1132

  Fly   396 IGQEHYNVARGVQKILQDYKSLQDI----IAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEV 456
            :|                 .|.||:    ..|:...|..:::|..:.:.|:...  ::|..:|..
Human  1133 LG-----------------LSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNS--AKPSPLASS 1178

  Fly   457 FTGHA-GKLVPLEQTIKGFSAI---LAGDYDH 484
            .|..: ..:....|.:.|..|:   |..|:.|
Human  1179 STASSTTSICVCGQVLAGAGALQCDLCQDWFH 1210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATPsynbetaNP_001259081.1 PRK09280 44..507 CDD:236447 97/552 (18%)
ATP-synt_ab_N 46..112 CDD:280947 20/89 (22%)
F1-ATPase_beta 114..393 CDD:238553 58/359 (16%)
ATP-synt_ab_C 401..508 CDD:278722 16/92 (17%)
KDM5CNP_004178.2 JmjN 13..54 CDD:128818
BRIGHT 80..170 CDD:128777
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 197..227
PHD1_KDM5C_5D 326..371 CDD:277077
JmjC 501..617 CDD:202224
zf-C5HC2 707..759 CDD:280996 3/4 (75%)
PLU-1 772..1098 CDD:285609 63/380 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1161..1181 3/21 (14%)
PHD2_KDM5C_5D 1187..1247 CDD:277081 6/24 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1316..1371
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1444..1560
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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