DRSC/TRiP Functional Genomics Resources

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Protein Alignment ATPsynbeta and kdm5bb

DIOPT Version :9

Sequence 1:NP_001259081.1 Gene:ATPsynbeta / 43829 FlyBaseID:FBgn0010217 Length:511 Species:Drosophila melanogaster
Sequence 2:XP_005167081.1 Gene:kdm5bb / 415256 ZFINID:ZDB-GENE-030424-1 Length:1522 Species:Danio rerio


Alignment Length:74 Identity:18/74 - (24%)
Similarity:36/74 - (48%) Gaps:18/74 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   376 GIYPAVDP--------LDSTSRIMDPNIIGQEHYNVARGVQKILQDYKSLQDIIAILGMDELSEE 432
            |::.|.||        |:|..|::|..:....|.::.|.:.:       ||:::.:  .:|| ||
Zfish   929 GVHQAEDPVANPCGLSLESMRRLIDRGVGLTPHPSIERMMAR-------LQELLTV--SEEL-EE 983

  Fly   433 DKLTVARAR 441
            :...:.:||
Zfish   984 NAQALLKAR 992

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATPsynbetaNP_001259081.1 PRK09280 44..507 CDD:236447 18/74 (24%)
ATP-synt_ab_N 46..112 CDD:280947
F1-ATPase_beta 114..393 CDD:238553 7/24 (29%)
ATP-synt_ab_C 401..508 CDD:278722 9/41 (22%)
kdm5bbXP_005167081.1 JmjN 14..55 CDD:128818
BRIGHT 81..171 CDD:128777
PHD1_KDM5B 316..361 CDD:277076
JmjC 491..607 CDD:202224
zf-C5HC2 697..749 CDD:280996
PLU-1 762..1096 CDD:285609 18/74 (24%)
PHD2_KDM5B 1189..1232 CDD:277080
PHD3_KDM5B 1465..1513 CDD:277157
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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