DRSC/TRiP Functional Genomics Resources

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Protein Alignment ATPsynbeta and Kdm6b

DIOPT Version :9

Sequence 1:NP_001259081.1 Gene:ATPsynbeta / 43829 FlyBaseID:FBgn0010217 Length:511 Species:Drosophila melanogaster
Sequence 2:XP_038942397.1 Gene:Kdm6b / 363630 RGDID:1307629 Length:1636 Species:Rattus norvegicus


Alignment Length:435 Identity:77/435 - (17%)
Similarity:131/435 - (30%) Gaps:171/435 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 ETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEFVQMSVEQEILVTGIKVVDLLAPYAKGGKIG 186
            |.:||......:|:|...|:|:       ...|:......::|                .||...
  Rat   919 ERVGRSAINPADPVDIADPVDS-------GTEPQPPPAQAKEE----------------SGGVAV 960

  Fly   187 LFGGAGVGKTVLIMELINNVAKAHGGY--SVFAGVGERTREGN-------------------DLY 230
            ...|.|.||         ...|.|..:  :....||.|.|||.                   ||.
  Rat   961 AAAGPGSGK---------RRQKEHRRHRRTCRDSVGRRPREGRAKAKAKAPKEKSRRVLGNLDLQ 1016

  Fly   231 NEMIE---------GGVISLKDKTSKV---------------ALVYGQMNE-----PPGARARVA 266
            :|.|:         ||...:|..|:..               |.|.|:...     |||. :|..
  Rat  1017 SEEIQGREKARPDVGGASKVKTPTTPAPPPAPAPSAQPTPPSAPVPGKKTREEAPGPPGV-SRAD 1080

  Fly   267 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAV------------------- 312
            :..|........:|.:..|:.:::..:.|...|||.....|:....                   
  Rat  1081 MLKLRSLSEGPPKELKIRLIKVESGDKETFIASEVEERRLRMADLTISHCAADVMRASKNAKVKG 1145

  Fly   313 GYQPTLATDMGSMQERITTTKKGSITSVQAIYVPADDLTDPAPA-------TTFAHL-------- 362
            .::.:..:...|::.:|.|.:|          :|.:.|..|.|:       ..|:.:        
  Rat  1146 KFRESYLSPAQSVKPKINTEEK----------LPREKLNPPTPSIYLESKRDAFSPVLLQFCTDP 1200

  Fly   363 -DATTVLSRAIA-----ELGIY----------------------PAVDPLDST-SRIMDPNIIGQ 398
             :..||: |.:|     .||::                      |:.:..|.| :|.:.|....:
  Rat  1201 RNPITVI-RGLAGSLRLNLGLFSTKTLVEASGEHTVEVRTQVQQPSDENWDLTGTRQIWPCESSR 1264

  Fly   399 EHYNVAR-------GVQKILQDYKSLQDIIAILGMDELSEEDKLT 436
            .|..:|:       ..|:.||:.|..:|       :|..|.|..|
  Rat  1265 SHTTIAKYAQYQASSFQESLQEEKESED-------EESEEPDSTT 1302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATPsynbetaNP_001259081.1 PRK09280 44..507 CDD:236447 77/435 (18%)
ATP-synt_ab_N 46..112 CDD:280947
F1-ATPase_beta 114..393 CDD:238553 65/383 (17%)
ATP-synt_ab_C 401..508 CDD:278722 10/43 (23%)
Kdm6bXP_038942397.1 TPR repeat 106..136 CDD:276809
JmjC 1336..1400 CDD:214721
JmjC 1370..1478 CDD:396791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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