DRSC/TRiP Functional Genomics Resources

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Protein Alignment apolpp and Apob

DIOPT Version :9

Sequence 1:NP_001259085.1 Gene:apolpp / 43827 FlyBaseID:FBgn0087002 Length:3351 Species:Drosophila melanogaster
Sequence 2:NP_062160.2 Gene:Apob / 54225 RGDID:2129 Length:4506 Species:Rattus norvegicus


Alignment Length:3849 Identity:735/3849 - (19%)
Similarity:1288/3849 - (33%) Gaps:1217/3849 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 LGCPKSDNGLLKYIPGNYYDYSFDSILTIGASSDVPNDSDDTSLKVSGSAKIFAKGNCGYTLQLS 95
            |.||| |....|::....|.|..:|      ||.|...:|..|     :.||    ||...|::.
  Rat    37 LNCPK-DATRFKHLRKYVYSYEAES------SSGVRGTADSRS-----ATKI----NCKVELEVP 85

  Fly    96 SV--KVTNTKESVEKKI----------LNSIQKPVQFTLVSGILEPQIC----------SDSSDL 138
            .|  .:..|.:...|::          :...:...:|.......|.::.          .|..:.
  Rat    86 QVCTLIMRTSQCTLKEVYGFNPEGKALMKKTKNSEEFASAMSRYELKLAFPEGKRVALYPDLGEP 150

  Fly   139 DYSLNIKRAVVSLLQSGIEAEHEVD------VFGMCPTH-TSTSKVGN-ANIITKARNLNSCSHR 195
            :|.|||||.::|.|....|.|.:..      |:|.|.|. |..|:.|. |..::..|||..|...
  Rat   151 NYILNIKRGIISALLVPPETEEDKQVLFQDTVYGNCSTQVTVNSRKGTVATEMSTERNLQHCDGF 215

  Fly   196 EQINS-----GLVSGKVNEKAGITSS------------------------LLLQANYIKESRIVN 231
            :.|::     .|:.|.|...:.:.||                        |.|..:|..:..|:.
  Rat   216 QPISTSVSPLALIKGLVRPLSTLISSSQSCQYTLEPKRKHVSEAICNEQHLFLPFSYKNKYGIMT 280

  Fly   232 HLIENVQLTETYKFIGNTKRNSDISAKVVTILKLKNPSGTKANSPGTGSTVRSLIFQRPETYTSK 296
            |:.:.:.|.:|.|.      ||......:..:.|...| ||:.||                  .|
  Rat   281 HVTQKLSLEDTPKI------NSRFFRGGINQVGLAFES-TKSTSP------------------PK 320

  Fly   297 NINALKTILSDLVDSTGDYVKKETAKKFVEFIRLLRQSDSETLLELAAFPHPNKV-LARKVYLDG 360
            ..:|:...|.:|...:......:.|..|.:.:..||....|.:..|.    |..: ::..:.|..
  Rat   321 QADAVLKTLQELKKLSISEQNAQRANLFHKLVTELRGLSGEAITSLL----PQLIEVSSPITLQA 381

  Fly   361 LFRTSTAESARVILKQLSKFDEKEKLLAILSLNIVKSVDKETLNQAASQLLPNAPKEL-----YI 420
            |.:....|....||:.| |.::...||..:...::..:...::.:.  |.:.|..|||     ..
  Rat   382 LIQCGQPECYTHILQWL-KTEKAHPLLIDIVTYLMALIPNPSVQRL--QEIFNTAKELQSRATLY 443

  Fly   421 AVGNLV-AKYCLKNYCQGPEIDAISKKFSDGLKHCKPNTKREEERIVYILKGLGNAKSLSGNTVA 484
            |:.:.| :.|.:.::.:.|.::.|:...   :|........:|:|...||:.:||........:.
  Rat   444 ALSHAVNSYYAIMDHSRSPVLEDIAGYL---MKQIDNECMGDEDRTFLILRVIGNMGRTMERVMP 505

  Fly   485 ALS----ECA-STGRSNRIRVAALHAFSKVKCEETLQSKSLELLKNRNEDSELRIEAYLSAISCP 544
            ||.    .|. ||..|.:|:.|||.|..|::..:.:::...:...|.....|.|:.|||..:..|
  Rat   506 ALKSSVLNCVRSTKPSLQIQKAALQALRKMEMGDEVRTILFDTFVNDVAPVEKRLAAYLLLMRSP 570

  Fly   545 NAEVANQISEIVNSETVNQVGGFISSNLKAIRDSTDVSRDQQKYHLANIRVTKTFP--VDYRRYS 607
            ::...|:|::::..|...||..|::|::..|.:|.::.....|..:.|..|....|  :|:|::|
  Rat   571 SSSDINKIAKLLQWEQSEQVKNFVASHIANILNSEELYVQDLKNLIKNALVNSRLPTIMDFRKFS 635

  Fly   608 FNNEVSYKLESL----GVGASTDYQIIYSQHGFLPRSSRINVTTEFFG-TNYNVFEASVRQENVE 667
            .|.::| |..|:    .|.|..:..:::....:||:.|.:..|...|| .:.::||..:..:..|
  Rat   636 RNYQIS-KSVSIPLFDPVSAKIEGNLVFDPSSYLPKESMLKTTLTVFGIASLDLFEIGLEGKGFE 699

  Fly   668 DVLEYYLGPKGL----VNKDF--------DEIVKLIEVGNNGVAAGGRARRSIVDD----VSKIS 716
            ..||...|.:|.    |||..        |.:.|:: |.:.|.....:..:.:|:.    |.|:.
  Rat   700 PTLEALFGKQGFFPDSVNKALYWVNGQVPDRVSKVL-VDHFGYTKDDKHEQDMVNGIMPIVDKLI 763

  Fly   717 KKYKMYGVKNVQDLNLDVSLKLFGSELAFLSLGD----------------NIPSSLDDIINYFST 765
            |:.|...:...:     ..|::.|.||.|:.|.|                .:|..:...|.    
  Rat   764 KELKSKEIPEAR-----AYLRILGKELGFVRLQDLQVLGKLLLNGAQTFRGVPQMIVQAIR---- 819

  Fly   766 SFEKAKQELSSFEKQFSSHHLFLDTDLAYPTSIGVPLELVAQGFAATKVDLAVSLDINAILEQNW 830
              |.:|.:|       ..|::|::.....||.:|:.|::.:.|.....:...|.|::..|..:..
  Rat   820 --EGSKDDL-------FLHYIFMENAFELPTGVGLQLQVSSSGVFTPGIKAGVRLELANIQAELV 875

  Fly   831 QKAKYRLKFVPSVDINANVQIGFNAQVLSTGLRVVSSAHSATGSDITVAVISDGEGFNVDLELPR 895
            .|....|:||.::.|       .......:|:::.::....:|.:..|| :..|: ..|.:..|:
  Rat   876 AKPSVSLEFVTNMGI-------IIPDFAKSGVQMNTNFFHESGLEARVA-LKAGQ-LKVIIPSPK 931

  Fly   896 EKLELINFNVDTELYVAEQDKQKAI--ALKGNKKNKNSQPSEICFNQLELVGLNICIKSSTSLSE 958
            ..::|  |:....|::....|.:.|  .::..|.....:|.        ..|:|.|...:.|   
  Rat   932 RPVKL--FSGSNTLHLVSTTKTEVIPPLIENRKSWSTCKPF--------FTGMNYCTTGAYS--- 983

  Fly   959 VQAGNGNVAERGLSVSEKFHLSRPFNFAVY--LTTERKFTFKGIHTQEAFSQKWKLDYSTPGSKV 1021
                |.:..|.                |.|  ||.:.::               :|:....|...
  Rat   984 ----NASSTES----------------ASYYPLTGDTRY---------------ELELKPTGEVE 1013

  Fly  1022 SHDTTVVYELGNKPKTFSRLSFDNSQCHFAVEGGINNDKNELVVYGQYEQDKEIKKSKI---GF- 1082
            .:..:..|||..:.|:.    .|..:.....||   ..::|.....:|.:......|::   || 
  Rat  1014 QYSASATYELLKEDKSL----VDTLKFLVQAEG---VQQSEATAMFKYNRRSRTLSSEVLIPGFD 1071

  Fly  1083 -------------SKNGNEYKPLIEIQDNNGISNSINGY-----HADGKIVVKKNSNNIERYNFE 1129
                         ||:.|.||.:::||:......|:.|:     ..|||:   |...:|.|...|
  Rat  1072 VNFGTILRVNDESSKDKNTYKLILDIQNKKITEVSVVGHVSYDKKGDGKV---KGVVSIPRLQAE 1133

  Fly  1130 NFQVSNSNNAHVAVNGWSDVGTNSLTSELRISLDHQTFLIKENLKLENGLYEAGFFINDEHSPEN 1194
                           ..|:|.|:...::|...:|                           |...
  Rat  1134 ---------------ARSEVHTHWSPTKLLFQMD---------------------------SSAT 1156

  Fly  1195 IYGSSIHLTIADQSYALKTNGKAAAWSIGSDGSFNFQKLADSNSARAGSLVENVEIQYK-NKQVG 1258
            .|||:|              .|..||...:                     |.:|..:. ...|.
  Rat  1157 AYGSTI--------------SKRVAWRYDN---------------------EKIEFDWNTGTNVD 1186

  Fly  1259 GIKIMSNFDVNKMDVDVEISREQKIGSIIVKYESNQRHAQDYSLEASAKINKHSIDVISKCDFNG 1323
            ..|:.|||       .|::||             ..|...:|                       
  Rat  1187 TKKVASNF-------PVDLSR-------------YPRMVHEY----------------------- 1208

  Fly  1324 NVYVVDNSLVTSWGTLLSAKGEIGQRYSAQDININIQGNVQISGKDKVTQWI-LKVIGTPDKTNS 1387
                              |.|.:..|....|:.....|:..|..   ...|: :...|.|     
  Rat  1209 ------------------ANGLLDHRVPQTDMTFRHMGSKLIVA---TNTWLQMATRGLP----- 1247

  Fly  1388 DFRISRDTSELIKLTSESQHPQDKISFAKLNLIVKNQLTAKGEFRVAKNGKGDFTASIDT-LKTE 1451
                               :||.          :::.|....|..:.|.|..||....:. |||:
  Rat  1248 -------------------YPQS----------LQDHLNGLSELNLPKVGLPDFHIPDNLFLKTD 1283

  Fly  1452 PKHKLEIESKFHIQSPKYDIDASLTLDGKRKVHLKSENTIEKLKFSTKNIGEANDKIIAFEANGS 1516
            .:      .|:.:...:.:||..|.|.||....||...::.....:.|::|              
  Rat  1284 GR------VKYTLNKNRIEIDIPLPLGGKSSKDLKVPESVRTPALNFKSVG-------------- 1328

  Fly  1517 LKGELRGNGEIQGTFIFNAPDGRVIDGSINRKISTNAKSGLSQGNIDAQLSDTPFGSNKKRSISL 1581
                            |:.|...|                        |:.........:..:.|
  Rat  1329 ----------------FHLPSQEV------------------------QIPTFTIPKTHQLQVPL 1353

  Fly  1582 IGKLDRLNTKTKEFSANSNLVYTAFNGEKSEISYQIKQQPNGDAKNIDFSLKAYGN-PLPQPFEI 1645
            :|.|| |:|.......|.::.||..|..:...|.|.:.:...|:....||....|: ......:.
  Rat  1354 LGILD-LSTNVYSNLYNWSVSYTGGNTSRDHFSLQAQYRMKADSVVDLFSYSVQGSGETTYDSKS 1417

  Fly  1646 AFALG-DYSAQHAVVSITSKYGEIFSVSANGN---------YNNNQALEYGLQANIEIPKSTLKS 1700
            .|.|. |.|..|..  :.||: ::..|...||         :..:.||...:.|.:::.....:.
  Rat  1418 TFTLSCDGSLHHKF--LDSKF-KVSHVEKFGNNPVSKGLLTFETSSALGPQMSATVQLDSKKKQH 1479

  Fly  1701 LEINSHGKVLKSLIGNENAAYNVEFFLDSKTSLGQYARVNTVWNGTANDGSYDFEAQTNNM--ES 1763
            |.:             ::...:.:|.:.|..:.|:|..            ||:.::.|..|  ||
  Rat  1480 LYV-------------KDIKVDGQFRVFSLYAQGEYGL------------SYERDSMTGQMSGES 1519

  Fly  1764 PLKFNGKYHR---KQTGNIKDGDLTGKQTYVLNAQYGAQYVKMDASLGYGAEKVDIAYVIDSS-- 1823
            .:|||..|.:   :..|..:||.|:...|..|  |.|  ..|..|||.|  |..::....|||  
  Rat  1520 NMKFNSTYFQGTNQIVGMYQDGMLSVTSTSDL--QDG--IFKNTASLKY--ENYELTLKSDSSGQ 1578

  Fly  1824 FDSVKDIKVNIRTFKPLDDSTYVVTALFKQTD----KSYGLDTTFYHSAHKKGVDIRLDLLKEKP 1884
            ::       |......||.:....:||.:...    ||..|.|....|...:||::..|:|... 
  Rat  1579 YE-------NFAASNKLDMTFSKQSALLRSEHQANYKSLRLVTLLSGSLTSQGVELNADILGTD- 1635

  Fly  1885 IIISSIAELLGDRKGKVLFEILNLADLDIKINSEASYVSIDEFYIIVNWSSKKLKLDGYELEARA 1949
                                         |||:.|            :.|:.|:..||....|..
  Rat  1636 -----------------------------KINTGA------------HKSTLKIAQDGVSTSATT 1659

  Fly  1950 QSKNIKIQLKNENGIIFSGTATYALKKELNKTIIDGQGKVQYQGKALSGNFKLTRQHFDFGTDRE 2014
            ..|...:.|:||            |..||.   :.|..    ...:.||.||  ..|..|..|..
  Rat  1660 NLKYSPLLLENE------------LNAELG---LSGAS----MKLSTSGRFK--EHHAKFSLDGR 1703

  Fly  2015 VGFSYTFMGNLGSKNGLGTLKITNKEFNTKFSVCEEKRQCTNLIVQSIVSIDEQKLDAVEHTTLI 2079
            ...:...:|::.....||.  .:...||.|.|     |:...|....:.|..|.|||   ||.  
  Rat  1704 AALTEVSLGSIYQAMILGA--DSKNVFNFKLS-----REGLKLSNDMMGSYAEMKLD---HTH-- 1756

  Fly  2080 IVDLRDFGYPYEFELKSQNTRQGLKYQYHLDSFIITGNNFKYQFTANVQPTSSTIKLALP-KRQI 2143
              .||..|...:|..|..|...|.|:             :|..|...:||.|..|.|:.. |...
  Rat  1757 --SLRISGLSLDFFSKMDNIYSGDKF-------------YKQNFNLQLQPYSFGITLSNDLKYDA 1806

  Fly  2144 LFETTQ--------KIPADGSLFGRYEQTASFFIDKLQKPDDVA---RFSAIVDVTGTERVAFNA 2197
            |..|..        |:...|:..|.|:......|..:...|.|.   |...:..|.|.|      
  Rat  1807 LVLTNNGRLRLEPLKLNVGGNFKGTYQNNELKHIYTISYTDLVVASYRADTVATVQGVE------ 1865

  Fly  2198 NGKLKFEHPTIRPLSISGQLNGDVNQQIASAEV----------IFDIFRL--------PEQKVVG 2244
                 |.|          :||.|:....:|.:|          ..::||.        .:....|
  Rat  1866 -----FSH----------RLNADIEGLASSVDVTTSYSSDPLHFNNVFRFVLAPFTLGVDTHTSG 1915

  Fly  2245 NSEL--------------------------RNSRSQNGFNIAYITTVKSA--------------- 2268
            :.::                          .:.:.....|:.|..:|.:|               
  Rat  1916 DGKMSLWGEHTGQMYSKFLLKAEPLALTFSHDYKGSTSHNLLYKNSVSTALEHTLSALLTPAEQT 1980

  Fly  2269 -GLQFQYQINSNA-AVDIEAHEYN----IGLELNNGEIDV--------------KAISFLNKEKF 2313
             ..:|:..:|... :.:.||  ||    ||:|| :|..|:              :.::.||..:.
  Rat  1981 SSWKFKTSLNDKVYSQEFEA--YNTKDKIGIEL-SGRADLSGLYSPIKVPFFYSEPVNVLNSLEI 2042

  Fly  2314 EISLSESNKHIIYIVGDFSKQN--HYAKL---NTKVQILDKNPIEITS-------EVQPNSA--- 2363
            ..:..|..:..|..|..:.|..  |...|   .:....|::|...|.|       |:|..|.   
  Rat  2043 NDAFDEPREFTIDAVVKYDKNQDVHTISLPFFQSLPDYLERNRRGIISLLEAMKGELQRLSVDQF 2107

  Fly  2364 ----KIILKR-----QDFIDGTAEVKLGKEFKVDVIGSGKQLFNGRVALDATNFLQTNYFINED- 2418
                ::.|.|     .|:::.:       :::..|.|:.::|         |:|:: ||.|.:: 
  Rat  2108 VRKYRVALSRLPQQIHDYLNAS-------DWERQVAGAKEKL---------TSFME-NYRITDND 2155

  Fly  2419 ----------HLNGFWHIVESEINKDSEYISENI-KERLKKS-RQVTDKI--------------V 2457
                      :||.....:|:...:..:||.:|. .:.||:: .|:.|:|              |
  Rat  2156 VLIALDSAKINLNEKLSQLETYAIQFDQYIRDNYDAQDLKRTIAQIIDRIIEKLKMLDEQYHIRV 2220

  Fly  2458 KLAK------------------EAGPDF-----------SKLQGKLLDYKNDI----VQELEAD- 2488
            .|||                  .:|..:           .::|.||...:..|    :|:|.|: 
  Rat  2221 NLAKSIHNLYLFVENVDLNQISSSGASWIQNVDTKYQIRIQIQEKLQHLRTQIHNIDIQQLAAEL 2285

  Fly  2489 -QSIAPI-----IDGIRT--LFKKIAGIVDDINKAISEILEKAQKSIVDIYDKLQALWKDSLLKA 2545
             |.|..:     :|.:||  ||::|:.|::.:...:..::|..:  :.:..:..:.:.:: |::.
  Rat  2286 KQQIEALDVPMHLDQLRTAILFQRISVIIERVKYFVMNLIEDFK--VTEKINTFRVIVRE-LIEK 2347

  Fly  2546 WEDFIITVQKLISTLKTEFIKIC--------TQSFKDLLSALEKYGPALKN-YGKAIGEIVKPIN 2601
            :|     |.:.|..|..:.|::.        .|...::|..:|     :|: |.|.:|.|     
  Rat  2348 YE-----VDRQIQVLMDKSIELAHRYSLSEPLQKLSNVLQQIE-----IKDYYDKLVGFI----- 2397

  Fly  2602 DAAQEVIKIVVNAAEGVTHEFKQYVASLPSFESIRNEFND----KVKVLKLFE----------KA 2652
            |...|.||.|                   ||::|..|.|.    .||.||.|:          |.
  Rat  2398 DDTVEWIKAV-------------------SFKNIIEELNRLIDMSVKKLKAFDYHQFVDKTNSKI 2443

  Fly  2653 TELTNSLFDQINI--LPQTPE------------TSEFLQKLHDYLI-----------AKLKQE-- 2690
            .|:|..:..:|..  |||..|            .|..|:||.|..:           |::|.:  
  Rat  2444 REMTQRINAEIQALELPQKTEALKLWVEDFKTTVSNSLEKLKDTKVTVVVDWLQDGLAQIKAQFQ 2508

  Fly  2691 -----------HIDNEKYIEELGQLLIKAVRSIWVSIRSTYPGSSDHVIDF------QSWIGSLT 2738
                       .:|.:..:|....|:.:...::...|...:..::.::.||      |.|..|:.
  Rat  2509 DALEDVRDRIYQMDIQGELERCLSLVSQVYSTVVTYISDWWTLTAKNITDFAEQYSTQKWAESVK 2573

  Fly  2739 HSFDSLAVLPSILSFRSSI------LNCLLNENWDV------VFNKKLLYSWIFFNDFELRGHVV 2791
            ...:...::|.|.:|..::      |:.|...|:..      :.:.::...||   :|::..:|.
  Rat  2574 ALVEQGFIVPEIQTFLGTMPAFEVSLHALQEANFQTPDFIVPLTDLRIPSIWI---NFKMLKNVK 2635

  Fly  2792 DGKHIFTFDGLNFAYPGNCKYILAQDSVDNNFTIIGQLTNGKLKSITLIDREGSYFEVADNLALK 2856
                    ..|.|:.|   ::.|.......:|||  .|...|.|.|..||:         .|:.:
  Rat  2636 --------IPLRFSTP---EFTLLNTFRVRSFTI--DLLEIKAKIIRTIDQ---------MLSSE 2678

  Fly  2857 LNGNLVE-YPQHLSGLH---AWRRFYTIHL----YSEYGVGIVCTSDLKVCHININGF---YTSK 2910
            |...|.| |.:.|..::   |.......|:    ..|:.:..|...||:|..::|..|   :.|.
  Rat  2679 LQWPLPEVYLRDLEMVNISLARLSLPDFHVPEITIPEFTIPNVNLKDLQVPDLHIPEFQLPHLSC 2743

  Fly  2911 TRGLLGNGNAEP----YDDFLLIDG-------TLAENSA---ALGNDYGVGKCTAIEFDNNQFKS 2961
            |..:...|....    .....::|.       |.:||.|   |.....|..|..|:.||   |::
  Rat  2744 TTEIPAFGKLHSVLKIQSPLFILDASANIQNITTSENKAEIVASVTARGESKFEALNFD---FQA 2805

  Fly  2962 SKRQEMCSELFGIESTL--AFNFITLDSRPYRKACDIALAKVAEKEKEATA------CTFALAYG 3018
               |....||......|  :.||.:...|...:...:...|..|.:.:..|      .|.....|
  Rat  2806 ---QAQFLELNANPLVLKESVNFSSKHVRMEHEGKILVSGKALEGKSDTVARLHTEKNTVEFNNG 2867

  Fly  3019 SAVKQINKWV----------LLPPRC-----------IKCAGPAGQ---------------HDFG 3047
            ..||..|::.          |..||.           ||....||.               .:|.
  Rat  2868 IVVKINNQFTLDSQTKYFHKLSVPRLDFSSKASLNNEIKTLLEAGHMAWTSSGTGSWNWACPNFS 2932

  Fly  3048 DEFTVKLPNNKVDVVFVVDINVTP-GVLSNLIAPAINDIRESLRSRGF---SDVQVGVIVFEETK 3108
            ||   .:.::|:.  |:||..:.. |:.:|:....:..:::.....||   |..:|...| |...
  Rat  2933 DE---GIHSSKIS--FIVDGPIASFGLSNNINGKHLRVVQKLTSESGFLNYSRFEVESKV-ESQH 2991

  Fly  3109 RYPALLTSDG--------------------GKI---------------------NYKGNVA---D 3129
            ...::||::|                    ||:                     |.:||:.   .
  Rat  2992 VGSSILTAEGRALLGDAKAEMTGEHNANLNGKVIGTLKNSLFFSAQPFEITASTNNEGNLKVSFP 3056

  Fly  3130 VKLAGIKSFCDNCVEQIITEKRILDIYNSLKEIVKGIAPQADEKAFQLAL---DYPFRAGAA--- 3188
            :||.|...|.:|                    ....::|.|.:.::||:.   .|.:....:   
  Rat  3057 LKLTGKIDFLNN--------------------YALFLSPHAQQASWQLSTRFNQYKYNQNFSAIN 3101

  Fly  3189 ------KSIIGVRSDSLEYKNWWKFVRAQLTGSITKFDGALIHLIAPVKGLSL--EGVLSEKLIG 3245
                  .||:.....:|::.| ......::....|:|...|:      |..|:  |..|.|.|..
  Rat  3102 NEHNMEASIVMNGDANLDFLN-IPLTIPEINLPYTRFTTPLL------KDFSIWEETGLKEFLKT 3159

  Fly  3246 FNSRLVATVDGKDSKKRTK--LQFDNDMGIDFVLNN-GGWVFATQNFEKLKASDQKKMLNQITSS 3307
            .......::..:..|.|.|  :.....|..:|:||| ..|   .:.|||::    ...|:.:|:|
  Rat  3160 TKQSFDLSIKAQYKKNRDKHSVVIPLKMFYEFMLNNVNSW---DRKFEKVR----DNALHFLTAS 3217

  Fly  3308 LADT-----LFKTE 3316
            ..:|     .:|||
  Rat  3218 YNETKIKFDKYKTE 3231

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
apolppNP_001259085.1 Vitellogenin_N 43..573 CDD:279663 126/600 (21%)
DUF1943 605..911 CDD:286281 69/342 (20%)
DUF1081 932..1031 CDD:283982 14/100 (14%)
VWD 2789..2931 CDD:214566 32/156 (21%)
ApobNP_062160.2 LPD_N 46..598 CDD:214755 127/601 (21%)
DUF1943 633..945 CDD:286281 69/342 (20%)
DUF1081 962..1063 CDD:283982 23/153 (15%)
COG1340 2206..2485 CDD:224259 62/315 (20%)
ApoB100_C 4435..4491 CDD:289274
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 54 1.000 Domainoid score I10935
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9078
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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