Sequence 1: | NP_001259085.1 | Gene: | apolpp / 43827 | FlyBaseID: | FBgn0087002 | Length: | 3351 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_062160.2 | Gene: | Apob / 54225 | RGDID: | 2129 | Length: | 4506 | Species: | Rattus norvegicus |
Alignment Length: | 3849 | Identity: | 735/3849 - (19%) |
---|---|---|---|
Similarity: | 1288/3849 - (33%) | Gaps: | 1217/3849 - (31%) |
- Green bases have known domain annotations that are detailed below.
Fly 31 LGCPKSDNGLLKYIPGNYYDYSFDSILTIGASSDVPNDSDDTSLKVSGSAKIFAKGNCGYTLQLS 95
Fly 96 SV--KVTNTKESVEKKI----------LNSIQKPVQFTLVSGILEPQIC----------SDSSDL 138
Fly 139 DYSLNIKRAVVSLLQSGIEAEHEVD------VFGMCPTH-TSTSKVGN-ANIITKARNLNSCSHR 195
Fly 196 EQINS-----GLVSGKVNEKAGITSS------------------------LLLQANYIKESRIVN 231
Fly 232 HLIENVQLTETYKFIGNTKRNSDISAKVVTILKLKNPSGTKANSPGTGSTVRSLIFQRPETYTSK 296
Fly 297 NINALKTILSDLVDSTGDYVKKETAKKFVEFIRLLRQSDSETLLELAAFPHPNKV-LARKVYLDG 360
Fly 361 LFRTSTAESARVILKQLSKFDEKEKLLAILSLNIVKSVDKETLNQAASQLLPNAPKEL-----YI 420
Fly 421 AVGNLV-AKYCLKNYCQGPEIDAISKKFSDGLKHCKPNTKREEERIVYILKGLGNAKSLSGNTVA 484
Fly 485 ALS----ECA-STGRSNRIRVAALHAFSKVKCEETLQSKSLELLKNRNEDSELRIEAYLSAISCP 544
Fly 545 NAEVANQISEIVNSETVNQVGGFISSNLKAIRDSTDVSRDQQKYHLANIRVTKTFP--VDYRRYS 607
Fly 608 FNNEVSYKLESL----GVGASTDYQIIYSQHGFLPRSSRINVTTEFFG-TNYNVFEASVRQENVE 667
Fly 668 DVLEYYLGPKGL----VNKDF--------DEIVKLIEVGNNGVAAGGRARRSIVDD----VSKIS 716
Fly 717 KKYKMYGVKNVQDLNLDVSLKLFGSELAFLSLGD----------------NIPSSLDDIINYFST 765
Fly 766 SFEKAKQELSSFEKQFSSHHLFLDTDLAYPTSIGVPLELVAQGFAATKVDLAVSLDINAILEQNW 830
Fly 831 QKAKYRLKFVPSVDINANVQIGFNAQVLSTGLRVVSSAHSATGSDITVAVISDGEGFNVDLELPR 895
Fly 896 EKLELINFNVDTELYVAEQDKQKAI--ALKGNKKNKNSQPSEICFNQLELVGLNICIKSSTSLSE 958
Fly 959 VQAGNGNVAERGLSVSEKFHLSRPFNFAVY--LTTERKFTFKGIHTQEAFSQKWKLDYSTPGSKV 1021
Fly 1022 SHDTTVVYELGNKPKTFSRLSFDNSQCHFAVEGGINNDKNELVVYGQYEQDKEIKKSKI---GF- 1082
Fly 1083 -------------SKNGNEYKPLIEIQDNNGISNSINGY-----HADGKIVVKKNSNNIERYNFE 1129
Fly 1130 NFQVSNSNNAHVAVNGWSDVGTNSLTSELRISLDHQTFLIKENLKLENGLYEAGFFINDEHSPEN 1194
Fly 1195 IYGSSIHLTIADQSYALKTNGKAAAWSIGSDGSFNFQKLADSNSARAGSLVENVEIQYK-NKQVG 1258
Fly 1259 GIKIMSNFDVNKMDVDVEISREQKIGSIIVKYESNQRHAQDYSLEASAKINKHSIDVISKCDFNG 1323
Fly 1324 NVYVVDNSLVTSWGTLLSAKGEIGQRYSAQDININIQGNVQISGKDKVTQWI-LKVIGTPDKTNS 1387
Fly 1388 DFRISRDTSELIKLTSESQHPQDKISFAKLNLIVKNQLTAKGEFRVAKNGKGDFTASIDT-LKTE 1451
Fly 1452 PKHKLEIESKFHIQSPKYDIDASLTLDGKRKVHLKSENTIEKLKFSTKNIGEANDKIIAFEANGS 1516
Fly 1517 LKGELRGNGEIQGTFIFNAPDGRVIDGSINRKISTNAKSGLSQGNIDAQLSDTPFGSNKKRSISL 1581
Fly 1582 IGKLDRLNTKTKEFSANSNLVYTAFNGEKSEISYQIKQQPNGDAKNIDFSLKAYGN-PLPQPFEI 1645
Fly 1646 AFALG-DYSAQHAVVSITSKYGEIFSVSANGN---------YNNNQALEYGLQANIEIPKSTLKS 1700
Fly 1701 LEINSHGKVLKSLIGNENAAYNVEFFLDSKTSLGQYARVNTVWNGTANDGSYDFEAQTNNM--ES 1763
Fly 1764 PLKFNGKYHR---KQTGNIKDGDLTGKQTYVLNAQYGAQYVKMDASLGYGAEKVDIAYVIDSS-- 1823
Fly 1824 FDSVKDIKVNIRTFKPLDDSTYVVTALFKQTD----KSYGLDTTFYHSAHKKGVDIRLDLLKEKP 1884
Fly 1885 IIISSIAELLGDRKGKVLFEILNLADLDIKINSEASYVSIDEFYIIVNWSSKKLKLDGYELEARA 1949
Fly 1950 QSKNIKIQLKNENGIIFSGTATYALKKELNKTIIDGQGKVQYQGKALSGNFKLTRQHFDFGTDRE 2014
Fly 2015 VGFSYTFMGNLGSKNGLGTLKITNKEFNTKFSVCEEKRQCTNLIVQSIVSIDEQKLDAVEHTTLI 2079
Fly 2080 IVDLRDFGYPYEFELKSQNTRQGLKYQYHLDSFIITGNNFKYQFTANVQPTSSTIKLALP-KRQI 2143
Fly 2144 LFETTQ--------KIPADGSLFGRYEQTASFFIDKLQKPDDVA---RFSAIVDVTGTERVAFNA 2197
Fly 2198 NGKLKFEHPTIRPLSISGQLNGDVNQQIASAEV----------IFDIFRL--------PEQKVVG 2244
Fly 2245 NSEL--------------------------RNSRSQNGFNIAYITTVKSA--------------- 2268
Fly 2269 -GLQFQYQINSNA-AVDIEAHEYN----IGLELNNGEIDV--------------KAISFLNKEKF 2313
Fly 2314 EISLSESNKHIIYIVGDFSKQN--HYAKL---NTKVQILDKNPIEITS-------EVQPNSA--- 2363
Fly 2364 ----KIILKR-----QDFIDGTAEVKLGKEFKVDVIGSGKQLFNGRVALDATNFLQTNYFINED- 2418
Fly 2419 ----------HLNGFWHIVESEINKDSEYISENI-KERLKKS-RQVTDKI--------------V 2457
Fly 2458 KLAK------------------EAGPDF-----------SKLQGKLLDYKNDI----VQELEAD- 2488
Fly 2489 -QSIAPI-----IDGIRT--LFKKIAGIVDDINKAISEILEKAQKSIVDIYDKLQALWKDSLLKA 2545
Fly 2546 WEDFIITVQKLISTLKTEFIKIC--------TQSFKDLLSALEKYGPALKN-YGKAIGEIVKPIN 2601
Fly 2602 DAAQEVIKIVVNAAEGVTHEFKQYVASLPSFESIRNEFND----KVKVLKLFE----------KA 2652
Fly 2653 TELTNSLFDQINI--LPQTPE------------TSEFLQKLHDYLI-----------AKLKQE-- 2690
Fly 2691 -----------HIDNEKYIEELGQLLIKAVRSIWVSIRSTYPGSSDHVIDF------QSWIGSLT 2738
Fly 2739 HSFDSLAVLPSILSFRSSI------LNCLLNENWDV------VFNKKLLYSWIFFNDFELRGHVV 2791
Fly 2792 DGKHIFTFDGLNFAYPGNCKYILAQDSVDNNFTIIGQLTNGKLKSITLIDREGSYFEVADNLALK 2856
Fly 2857 LNGNLVE-YPQHLSGLH---AWRRFYTIHL----YSEYGVGIVCTSDLKVCHININGF---YTSK 2910
Fly 2911 TRGLLGNGNAEP----YDDFLLIDG-------TLAENSA---ALGNDYGVGKCTAIEFDNNQFKS 2961
Fly 2962 SKRQEMCSELFGIESTL--AFNFITLDSRPYRKACDIALAKVAEKEKEATA------CTFALAYG 3018
Fly 3019 SAVKQINKWV----------LLPPRC-----------IKCAGPAGQ---------------HDFG 3047
Fly 3048 DEFTVKLPNNKVDVVFVVDINVTP-GVLSNLIAPAINDIRESLRSRGF---SDVQVGVIVFEETK 3108
Fly 3109 RYPALLTSDG--------------------GKI---------------------NYKGNVA---D 3129
Fly 3130 VKLAGIKSFCDNCVEQIITEKRILDIYNSLKEIVKGIAPQADEKAFQLAL---DYPFRAGAA--- 3188
Fly 3189 ------KSIIGVRSDSLEYKNWWKFVRAQLTGSITKFDGALIHLIAPVKGLSL--EGVLSEKLIG 3245
Fly 3246 FNSRLVATVDGKDSKKRTK--LQFDNDMGIDFVLNN-GGWVFATQNFEKLKASDQKKMLNQITSS 3307
Fly 3308 LADT-----LFKTE 3316 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
apolpp | NP_001259085.1 | Vitellogenin_N | 43..573 | CDD:279663 | 126/600 (21%) |
DUF1943 | 605..911 | CDD:286281 | 69/342 (20%) | ||
DUF1081 | 932..1031 | CDD:283982 | 14/100 (14%) | ||
VWD | 2789..2931 | CDD:214566 | 32/156 (21%) | ||
Apob | NP_062160.2 | LPD_N | 46..598 | CDD:214755 | 127/601 (21%) |
DUF1943 | 633..945 | CDD:286281 | 69/342 (20%) | ||
DUF1081 | 962..1063 | CDD:283982 | 23/153 (15%) | ||
COG1340 | 2206..2485 | CDD:224259 | 62/315 (20%) | ||
ApoB100_C | 4435..4491 | CDD:289274 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 54 | 1.000 | Domainoid score | I10935 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | mtm9078 | |
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.000 |