DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment apolpp and Apob

DIOPT Version :9

Sequence 1:NP_001259085.1 Gene:apolpp / 43827 FlyBaseID:FBgn0087002 Length:3351 Species:Drosophila melanogaster
Sequence 2:NP_033823.2 Gene:Apob / 238055 MGIID:88052 Length:4505 Species:Mus musculus


Alignment Length:4034 Identity:773/4034 - (19%)
Similarity:1369/4034 - (33%) Gaps:1339/4034 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 NLGCPKSDNGLLKYIPGNYYDYSFDSILTIGASSDVPNDSDDTS-LKVSGSAKIFAKGNCGYTLQ 93
            :..||| |....|::....|:|..:|      ||.|...:|..| .|::...::.....||:.::
Mouse    36 SFSCPK-DATRFKHLRKYVYNYEAES------SSGVQGTADSRSATKINCKVELEVPQICGFIMR 93

  Fly    94 -----LSSVKVTNTK-ESVEKKILNS-------IQKPVQFTLVSG---ILEPQICSDSSDLDYSL 142
                 |..|...|.: :::.||..||       .:..::..:..|   :|.|    |..:..|.|
Mouse    94 TNQCTLKEVYGFNPEGKALMKKTKNSEEFAAAMSRYELKLAIPEGKQIVLYP----DKDEPKYIL 154

  Fly   143 NIKRAVVSLLQSGIEAEHEVD------VFGMCPTH-TSTSKVGNA-NIITKARNLNSCSHREQIN 199
            ||||.::|.|....|.|.:..      |:|.|.|. |..|:.|.. ..::..|||..|...:.|:
Mouse   155 NIKRGIISALLVPPETEEDQQELFLDTVYGNCSTQVTVNSRKGTVPTEMSTERNLQQCDGFQPIS 219

  Fly   200 S-----GLVSGKVNEKAGITSS------------------------LLLQANYIKESRIVNHLIE 235
            :     .|:.|.|:..:.:.||                        |.|..:|..:..|:..:.:
Mouse   220 TSVSPLALIKGLVHPLSTLISSSQTCQYTLDPKRKHVSEAVCDEQHLFLPFSYKNKYGIMTRVTQ 284

  Fly   236 NVQLTETYKF---------------IGNTKRNS---DISAKVVTILKLKNPSGTKANSPG----- 277
            .:.|.:|.|.               ..:||..|   ...|.:.|:.:||..|.::.|:..     
Mouse   285 KLSLEDTPKINSRFFSEGTNRMGLAFESTKSTSSPKQADAVLKTLQELKKLSISEQNAQRANLFN 349

  Fly   278 ---------TGSTVRSLIFQRPETYTSKNINALKTILSDLVDSTGDYVKKETAKKFVEFIRLLRQ 333
                     ||..:.||:.|..|..:...:.||              |:....:.:...::.|:.
Mouse   350 KLVTELRGLTGEAITSLLPQLIEVSSPITLQAL--------------VQCGQPQCYTHILQWLKT 400

  Fly   334 SDSETLLE------LAAFPHPNKVLARKVYLDGLFRTSTAESARVILKQLSKFDEKEKLLAILSL 392
            ..:..||.      :|..|:|:     ...|..:|.|:..:.:|..|..||.           ::
Mouse   401 EKAHPLLVDIVTYLMALIPNPS-----TQRLQEIFNTAKEQQSRATLYALSH-----------AV 449

  Fly   393 NIVKSVDKETLNQAASQLLPNAPKELYIAVGNLVAKYCLK---NYCQGPEIDAISKKFSDGLKHC 454
            |....||     .:.|.:|.:            :|.|.||   |.|.|                 
Mouse   450 NSYFDVD-----HSRSPVLQD------------IAGYLLKQIDNECTG----------------- 480

  Fly   455 KPNTKREEERIVYILKGLGNAKSLSGNTV---------AALSECASTGRSNRIRVAALHAFSKVK 510
                  .|:....||:.:||    .|.|:         :.||...||..|..|:.|||.|..|::
Mouse   481 ------NEDHTFLILRVIGN----MGRTMEQVMPALKSSVLSCVRSTKPSLLIQKAALQALRKME 535

  Fly   511 CEETLQSKSLELLKNRNEDSELRIEAYLSAISCPNAEVANQISEIVNSETVNQVGGFISSNLKAI 575
            .|:.:::...:...|.....|.|:.|||..:..|::...|:|::::..|...||..|::|::..|
Mouse   536 LEDEVRTILFDTFVNGVAPVEKRLAAYLLLMKNPSSSDINKIAQLLQWEQSEQVKNFVASHIANI 600

  Fly   576 RDSTDVSRDQQKYHLANIRVTKTFP--VDYRRYSFNNEVSYKLESL----GVGASTDYQIIYSQH 634
            .:|.::.....|..:.|......||  :|:|::|.|.::| |..||    .|....:..:|:...
Mouse   601 LNSEELYVQDLKVLIKNALENSQFPTIMDFRKFSRNYQIS-KSASLPMFDPVSVKIEGNLIFDPS 664

  Fly   635 GFLPRSSRINVTTEFFG-TNYNVFEASVRQENVEDVLEYYLGPKGL----VNKDF--------DE 686
            .:|||.|.:..|...|| .:.::||..:..:..|..||...|.:|.    |||..        |.
Mouse   665 SYLPRESLLKTTLTVFGLASLDLFEIGLEGKGFEPTLEALFGKQGFFPDSVNKALYWVNGRVPDG 729

  Fly   687 IVKLIEVGNNGVAAGGRARRSIVDDVSKISKKYKMYGVKNVQDLNLDVS---LKLFGSELAFLSL 748
            :.|:: |.:.|....|:..:.:|:.:..|..|.    :|:::...:..:   |::.|.||:|:.|
Mouse   730 VSKVL-VDHFGYTTDGKHEQDMVNGIMPIVDKL----IKDLKSKEIPEARAYLRILGKELSFVRL 789

  Fly   749 GD----------------NIPSSLDDIINYFSTSFEKAKQELSSFEKQFSSHHLFLDTDLAYPTS 797
            .|                .||..:...|.      |.:|.:|       ..|::|:|.....||.
Mouse   790 QDLQVLGKLLLSGAQTLQGIPQMVVQAIR------EGSKNDL-------FLHYIFMDNAFELPTG 841

  Fly   798 IGVPLELVAQGFAATKVDLAVSLDINAILEQNWQKAKYRLKFV------------PSVDINANV- 849
            .|:.|::.:.|.....:...|.|::..|..:...|....|:||            .||.:|.|. 
Mouse   842 AGLQLQVSSSGVFTPGIKAGVRLELANIQAELVAKPSVSLEFVTNMGIIIPDFAKSSVQMNTNFF 906

  Fly   850 -QIGFNAQV-LSTG-LRVVSSAHSATGSDITVAVISDGEGFNVDLELPREKLELINFNVDTELYV 911
             :.|..|:| |..| |:|:                           :|..|..:..|:....|::
Mouse   907 HESGLEARVALKAGQLKVI---------------------------IPSPKRPVKLFSGSNTLHL 944

  Fly   912 AEQDKQKAIALKGNKKNKNSQPSEICFNQLELVGLNICIKSSTSLSEVQAGNGNVAERGLSVSEK 976
            ....|.:.|.    ...:|.|....|  :....|:|.|...:.|       |.:..|.       
Mouse   945 VSTTKTEVIP----PLVENRQSWSTC--KPLFTGMNYCTTGAYS-------NASSTES------- 989

  Fly   977 FHLSRPFNFAVY--LTTERKFTFKGIHTQEAFSQKWKLDYSTPGSKVSHDTTVVYELGNKPKTFS 1039
                     |.|  ||.:.::               :|:....|....:..|..|||..:.|:. 
Mouse   990 ---------ASYYPLTGDTRY---------------ELELRPTGEVEQYSATATYELLKEDKSL- 1029

  Fly  1040 RLSFDNSQCHFAVEGGINNDKNELVVYGQYEQDKEIKKSKI---GF--------------SKNGN 1087
               .|..:.....||   ..::|..|..:|.:......|::   ||              :|:.|
Mouse  1030 ---VDTLKFLVQAEG---VQQSEATVLFKYNRRSRTLSSEVLIPGFDVNFGTILRVNDESAKDKN 1088

  Fly  1088 EYKPLIEIQDNNGISNSINGY-----HADGKIVVKKNSNNIERYNFEN--------------FQV 1133
            .||.:::||:......|:.|:     ..||||   |...:|.|...|.              ||:
Mouse  1089 TYKLILDIQNKKITEVSLVGHLSYDKKGDGKI---KGVVSIPRLQAEARSEVHTHWSSTKLLFQM 1150

  Fly  1134 SNSNNAHVAV------------------NGWSDVGTNSLTSELRISLDHQTFLIKENLKLENGLY 1180
            .:|..|:.:.                  |..::|.|..:.|...:.|.|...::.|   ..|||.
Mouse  1151 DSSATAYGSTISKRVTWRYDNEIIEFDWNTGTNVDTKKVASNFPVDLSHYPRMLHE---YANGLL 1212

  Fly  1181 EAGFFINDEHSPE-----NIYGSSIHLTIADQSY-ALKTNGKAAAWSIGSDGSFNFQKLADSNSA 1239
                   |...|:     ...||.  |.:|..:: .:.|.|.....::..    :...|::.|..
Mouse  1213 -------DHRVPQTDVTFRDMGSK--LIVATNTWLQMATRGLPYPQTLQD----HLNSLSELNLL 1264

  Fly  1240 RAG----SLVENVEIQYKNKQVGGIKIMSNFDVNKMDVDVEI------SREQKIGSII----VKY 1290
            :.|    .:.:|:.:    |..|.:|...|  .||:::|:.:      |::.|:...:    :.:
Mouse  1265 KMGLSDFHIPDNLFL----KTDGRVKYTMN--RNKINIDIPLPLGGKSSKDLKMPESVRTPALNF 1323

  Fly  1291 ESNQRHAQDYSLEASA----KINKHSIDVISKCDFNGNVYVVDNSLVTSWGTLLSAKGEIGQRYS 1351
            :|...|.....::...    |.::..:.::...|.:.|||    |.:.:|....:........:|
Mouse  1324 KSVGFHLPSREVQVPTFTIPKTHQLQVPLLGVLDLSTNVY----SNLYNWSASYTGGNTSRDHFS 1384

  Fly  1352 AQ-----------DI-NINIQGNVQISGKDKVTQWILKVIGTPDK--TNSDFRISR----DTSEL 1398
            .|           |: :.::||:.:.:...|.| :.|...|:...  .:|.|::|.    ..|.:
Mouse  1385 LQAQYRMKTDSVVDLFSYSVQGSGETTYDSKNT-FTLSCDGSLHHKFLDSKFKVSHVEKFGNSPV 1448

  Fly  1399 IK-----LTSESQHPQDKI-----SFAKLNLIVKNQLTAKGEFRVAK---NGKGDFTASIDTLKT 1450
            .|     .||.:..||...     |..|.:|.||: :...|:||.:.   .||...:...|....
Mouse  1449 SKGLLTFETSSALGPQMSATVHLDSKKKQHLYVKD-IKVDGQFRASSFYAQGKYGLSCERDVTTG 1512

  Fly  1451 EPKHKLEIESKFHIQSPKYD---------IDASLTL-------DG--KRKVHLKSENTIEKLKFS 1497
            :    |..||.....|..:.         .|.:|::       ||  |....||.||....||..
Mouse  1513 Q----LSGESNMRFNSTYFQGTNQIVGMYQDGALSITSTSDLQDGIFKNTASLKYENYELTLKSD 1573

  Fly  1498 T----KNIGEANDKIIAF-----------EAN-----------GSLKGE-LRGNGEIQGTFIFN- 1534
            :    :|...:|...:.|           :||           |||..: :..|.:|.||...| 
Mouse  1574 SSGQYENFAASNKLDVTFSTQSALLRSEHQANYKSLRLVTLLSGSLTSQGVELNADILGTDKINT 1638

  Fly  1535 ---------APDGRVIDGSINRKIS-------TNAKSGLSQGNIDAQLSDTPFGSNKKRSISLIG 1583
                     |.||.....:.|.|.|       .||:.|||             |::.|.|     
Mouse  1639 GAHKATLKIARDGLSTSATTNLKYSPLLLENELNAELGLS-------------GASMKLS----- 1685

  Fly  1584 KLDRLNTKTKEFSANSNLVYTAFNGEKSEISYQIKQQPNGDAKNI-DFSLKAYGNPLPQPFEIAF 1647
                .|.:.||..|..:|...|...|.|..|.........|:||| :|.|...|..|......::
Mouse  1686 ----TNGRFKEHHAKFSLDGRAALTEVSLGSIYQAMILGADSKNIFNFKLSREGLRLSNDLMGSY 1746

  Fly  1648 ALGDYSAQHAV------VSITSKYGEIFSVSANGNYNNNQALE-------------YGLQANIEI 1693
            |.......|::      :...||...|:|.......|.|..|:             ||.......
Mouse  1747 AEMKLDHTHSLNIAGLSLDFFSKMDNIYSGDKFYKQNFNLQLQPYSFITTLSNDLRYGALDLTNN 1811

  Fly  1694 PKSTLKSLEINSHGKVLKSLIGNE-NAAYNVEFFLDSKTSLGQYARVNTVWNGTANDGSY----D 1753
            .:..|:.|::|..|....:...|| ...|.:.:   :...:..| |.:||......:.|:    |
Mouse  1812 GRFRLEPLKLNVGGNFKGTYQNNELKHIYTISY---TDLVVASY-RADTVAKVQGVEFSHRLNAD 1872

  Fly  1754 FEAQTNNME-------SPLKFNGKYHRK--------QTGNIKDGDLT--GKQT------YVLNAQ 1795
            .|..|::::       .||.||..:|..        .|....||.|:  |:.|      ::|.|:
Mouse  1873 IEGLTSSVDVTTSYNSDPLHFNNVFHFSLAPFTLGIDTHTSGDGKLSFWGEHTGQLYSKFLLKAE 1937

  Fly  1796 YGAQYVKMDASLGYGAEKVDIAYVIDSSFDSVKDIKVNIRTFKPLDDSTYVVTALFKQTDKSYGL 1860
            ..|..|..|..   |:....:.|  :||..:..:..|:.........||:....  |..||.|..
Mouse  1938 PLALIVSHDYK---GSTSHSLPY--ESSISTALEHTVSALLTPAEQTSTWKFKT--KLNDKVYSQ 1995

  Fly  1861 DTTFYHSAHKKGVD-------------IRLDLLKEKPIIISSIAELLGDRKGKVLFEILNLADLD 1912
            |...|::..|.||:             |:|.....:|:                  .:||    .
Mouse  1996 DFEAYNTKDKIGVELSGRADLSGLYSPIKLPFFYSEPV------------------NVLN----G 2038

  Fly  1913 IKINSEASYVSID---EFYIIV------NWSSKKLKLDGYELEARAQSKNIKIQL-KNENGIIFS 1967
            :::|.     ::|   ||.||.      |.....:.|..:        |::...| :|..|:|  
Mouse  2039 LEVND-----AVDKPQEFTIIAVVKYDKNQDVHTINLPFF--------KSLPDYLERNRRGMI-- 2088

  Fly  1968 GTATYALKKELNKTIIDGQGKVQYQGKALSGNFKLTRQ--HFDFGTD--REVGFSYTFMGNLGSK 2028
             :...|::.||.:..:|     |:..|..:...:|.:|  |:...:|  |:|.         |:|
Mouse  2089 -SLLEAMRGELQRLSVD-----QFVRKYRAALSRLPQQIHHYLNASDWERQVA---------GAK 2138

  Fly  2029 NGLGTLKITNKEFNTKFSVCEEKRQCTNLIVQSIVSIDEQKLDAVEHTTLIIVDLRDFGYPYEFE 2093
            .     |||        |..|..|...|.:   :::||..|::..|.    :..|..:...::..
Mouse  2139 E-----KIT--------SFMENYRITDNDV---LIAIDSAKINFNEK----LSQLETYAIQFDQY 2183

  Fly  2094 LKSQNTRQGLK------------------YQYHLDSFIITGNNFKYQFTANVQPTSSTIKLALPK 2140
            :|.......||                  .|||:...:....:..|.|..||.            
Mouse  2184 IKDNYDPHDLKRTIAEIIDRIIEKLKILDEQYHIRVNLAKSIHNLYLFVENVD------------ 2236

  Fly  2141 RQILFETTQKIPADGSLFGRYEQTASFFIDKLQKPDDVARFSAIVDVTGTERVAFNANGKLKFEH 2205
                                ..|.:|            :..|.|.:|....:|......||:...
Mouse  2237 --------------------LNQVSS------------SNTSWIQNVDSNYQVRIQIQEKLQQLR 2269

  Fly  2206 PTIRPLSISGQLNGDVNQQIASAEVIFDIFRLPE----QKVVGNSELRNSRSQNGFNIAYITTVK 2266
            ..|:.:.|. ||..:|.:|:.:.:|...:.:|..    |::   |::             |..||
Mouse  2270 TQIQNIDIQ-QLAAEVKRQMDAIDVTMHLDQLRTAILFQRI---SDI-------------IDRVK 2317

  Fly  2267 SAGLQFQYQINSNAAVDIEAHEYNIGLELNNGEIDVKAISFLNKEKFEISLSESNKHIIYIVGDF 2331
                   |.: .|...|.:..|     ::|...:.|:.:.    ||:|:     ::||..::...
Mouse  2318 -------YFV-MNLIEDFKVTE-----KINTFRVIVRELI----EKYEV-----DQHIQVLMDKS 2360

  Fly  2332 SKQNHYAKLNTKVQILDKNPIEITSEVQPNSAKIILKRQDFIDGTAEVKLGKEFK---------V 2387
            .:..|...|:..:|.| .|.:: ..|::....|::    .|||.|.|......||         .
Mouse  2361 VELAHRYSLSEPLQKL-SNVLQ-RIEIKDYYEKLV----GFIDDTVEWLKALSFKNTIEELNRLT 2419

  Fly  2388 DVIGSGKQLFNGRVALDATNFLQTNYFINEDHLNGFWHIVESEINKDSEYISENIKERLKKSRQV 2452
            |::....:.|:....:|.||                     |:|.:.::.|:..| :.||..:::
Mouse  2420 DMLVKKLKAFDYHQFVDKTN---------------------SKIREMTQRINAEI-QALKLPQKM 2462

  Fly  2453 TDKIVKLAKEAGPDFSKLQGKLLDYKNDIVQELEADQSIAPIIDGIRTLFKKIAGIVDDINKAIS 2517
              :.:||..|             |:|..:...||            |....|:..::|.:...::
Mouse  2463 --EALKLLVE-------------DFKTTVSNSLE------------RLKDTKVTVVIDWLQDILT 2500

  Fly  2518 EILEKAQKSIVDIYDKLQALWKDSLLKAWEDFIITVQKLISTLKTEFIKICTQSFKDLLSALEKY 2582
            ::.:..|.::.|:.|:   :::..:.:..|.|:..|.::.|||.|......|.:.|::....|:|
Mouse  2501 QMKDHFQDTLEDVRDR---IYQMDIQRELEHFLSLVNQVYSTLVTYMSDWWTLTAKNITDFAEQY 2562

  Fly  2583 GPALKNYGKAIGEIVKPINDAAQEVIKIVVNAAEG-VTHEFKQYVASLPSFE-SIR----NEFND 2641
              :::|:.               |.||::|.  :| :..|.:.::.::|:|| |:|    ..|..
Mouse  2563 --SIQNWA---------------ESIKVLVE--QGFIVPEMQTFLWTMPAFEVSLRALQEGNFQT 2608

  Fly  2642 KVKVLKLFEKATELTNSLFDQI-NI-LPQTPETSEFLQ----KLHDYLIAKLKQEHIDNEKYIEE 2700
            .|.::.|.:.........|..: || :|....|.||..    .:|.:.|..|:.:    .|.|..
Mouse  2609 PVFIVPLTDLRIPSIRINFKMLKNIKIPLRFSTPEFTLLNTFHVHSFTIDLLEIK----AKIIRT 2669

  Fly  2701 LGQLLIKAVRSIW------------VSI---RSTYP-----------------GSSD------HV 2727
            :.|:|...::  |            |:|   |.|.|                 ...|      |:
Mouse  2670 IDQILSSELQ--WPLPEMYLRDLDVVNIPLARLTLPDFHVPEITIPEFTIPNVNLKDLHVPDLHI 2732

  Fly  2728 IDFQSWIGSLTHSFD--SLAVLPSILSFRSSILNCLLNENWDVVFNKKLLYSWIFFNDFELRGHV 2790
            .:||  :..|:|:.:  :...|.|||..:|.:.....|.|...|....        |..|:...|
Mouse  2733 PEFQ--LPHLSHTIEIPAFGKLHSILKIQSPLFILDANANIQNVTTSG--------NKAEIVASV 2787

  Fly  2791 VDGKHIFTFDGLNFAYPGNCKYI-------LAQDSV-----------DNNFTIIGQLTNGKLKSI 2837
            . .|....|:.|||.:....:::       :.::|:           :......|:...||..::
Mouse  2788 T-AKGESQFEALNFDFQAQAQFLELNPHPPVLKESMNFSSKHVRMEHEGEIVFDGKAIEGKSDTV 2851

  Fly  2838 TLIDREGSYFEVADNLALKLNGNL-----VEYPQHLS---------------------------- 2869
            ..:..|.:..|..:.:.:|:|..|     .:|...||                            
Mouse  2852 ASLHTEKNEVEFNNGMTVKVNNQLTLDSHTKYFHKLSVPRLDFSSKASLNNEIKTLLEAGHVALT 2916

  Fly  2870 -----------------GLHAWRRFYTI----------------HL--------------YSEYG 2887
                             |:|:.:..:|:                ||              ||::.
Mouse  2917 SSGTGSWNWACPNFSDEGIHSSQISFTVDGPIAFVGLSNNINGKHLRVIQKLTYESGFLNYSKFE 2981

  Fly  2888 VGIVCTSDLKVCHININGFYTSKTRGLLGNGNAEPYDDFLL-----IDGTLAENS---------- 2937
            |    .|.::..|:. :...|:..|.||.:..||...:...     :.||| :||          
Mouse  2982 V----ESKVESQHVG-SSILTANGRALLKDAKAEMTGEHNANLNGKVIGTL-KNSLFFSAQPFEI 3040

  Fly  2938 AALGNDYG---VG---KCTA-IEFDN---------------------NQFKSSKRQEMCSELFGI 2974
            .|..|:.|   ||   |.|. |:|.|                     ||:|.::.....:....|
Mouse  3041 TASTNNEGNLKVGFPLKLTGKIDFLNNYALFLSPRAQQASWQASTRFNQYKYNQNFSAINNEHNI 3105

  Fly  2975 ESTLAFN------FITLD------SRPY--------------------------RKACDIALAKV 3001
            |:::..|      |:.:.      :.||                          :::.|:::...
Mouse  3106 EASIGMNGDANLDFLNIPLTIPEINLPYTEFKTPLLKDFSIWEETGLKEFLKTTKQSFDLSVKAQ 3170

  Fly  3002 AEK--EKEATACTFALAYGSAVKQINKWVLLPPRCIKCAGPAGQHDFGDEFTVKLPNN------- 3057
            .:|  :|.:......:.|...:..:|.|                    |....|:.||       
Mouse  3171 YKKNSDKHSIVVPLGMFYEFILNNVNSW--------------------DRKFEKVRNNALHFLTT 3215

  Fly  3058 -------KVD--------------------VVFVVDINVTPGVLS-------------------- 3075
                   |||                    .:.||:|.|:|..:.                    
Mouse  3216 SYNEAKIKVDKYKTENSLNQPSGTFQNHGYTIPVVNIEVSPFAVETLASSHVIPTAISTPSVTIP 3280

  Fly  3076 --NLIAPAINDIRESLR-----------------SRGFSDVQVGVIVFEETKRYPAL--LTSDGG 3119
              |::.|:...:...|.                 .:||:.:        :....||:  .|.|  
Mouse  3281 GPNIMVPSYKLVLPPLELPVFHGPGNLFKFFLPDFKGFNTI--------DNIYIPAMGNFTYD-- 3335

  Fly  3120 KINYKGNVADVKL-AGIKSFCDNCVEQIITEKRILDIYNSLKEIVKGIAPQADEKAFQLA----L 3179
             .::|.:|..:.. ||:.:..|.....:.:...:.|   :|:..::|.:....::..:||    |
Mouse  3336 -FSFKSSVITLNTNAGLYNQSDIVAHFLSSSSFVTD---ALQYKLEGTSRLMRKRGLKLATAVSL 3396

  Fly  3180 DYPFRAGAAKSIIGVRSDSLEYKNWWKFVRAQLTGSITKFDGALIHLIAPVKGLSLEGVLS---- 3240
            ...|..|:..|.|     ||..||....||..          |.:|  ||:..::.:..|:    
Mouse  3397 TNKFVKGSHDSTI-----SLTKKNMEASVRTT----------ANLH--APIFSMNFKQELNGNTK 3444

  Fly  3241 ---------EKLIGFN-SRLVATVDGKDSKKRTKLQFDNDMGID--FVLNNGGWVFATQNFEK-- 3291
                     |....|| |:|.:|..|               |||  |.|.:....|:.::|.|  
Mouse  3445 SKPTVSSSIELNYDFNSSKLHSTATG---------------GIDHKFSLESLTSYFSIESFTKGN 3494

  Fly  3292 LKAS 3295
            :|:|
Mouse  3495 IKSS 3498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
apolppNP_001259085.1 Vitellogenin_N 43..573 CDD:279663 132/633 (21%)
DUF1943 605..911 CDD:286281 77/357 (22%)
DUF1081 932..1031 CDD:283982 16/100 (16%)
VWD 2789..2931 CDD:214566 34/244 (14%)
ApobNP_033823.2 Heparin-binding. /evidence=ECO:0000250 32..126 23/96 (24%)
Vitellogenin_N 46..597 CDD:279663 133/634 (21%)
Heparin-binding. /evidence=ECO:0000250 232..306 10/73 (14%)
DUF1943 632..944 CDD:286281 77/357 (22%)
Heparin-binding. /evidence=ECO:0000250 902..959 15/87 (17%)
DUF1081 961..1062 CDD:283982 25/147 (17%)
Heparin-binding. /evidence=ECO:0000250 2042..2177 39/184 (21%)
Heparin-binding. /evidence=ECO:0000250 3155..3230 13/94 (14%)
Basic (possible receptor binding region). /evidence=ECO:0000250 3168..3178 1/9 (11%)
LDL receptor binding. /evidence=ECO:0000250 3368..3388 3/22 (14%)
Heparin-binding. /evidence=ECO:0000250 3378..3511 36/153 (24%)
Basic (possible receptor binding region). /evidence=ECO:0000250 3381..3389 0/7 (0%)
ApoB100_C 4434..4490 CDD:289274
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 54 1.000 Domainoid score I11194
eggNOG 1 0.900 - - E1_KOG4338
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 1 Normalized mean entropy S10273
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm43226
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.850

Return to query results.
Submit another query.