DRSC/TRiP Functional Genomics Resources

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Protein Alignment apolpp and vwf

DIOPT Version :9

Sequence 1:NP_001259085.1 Gene:apolpp / 43827 FlyBaseID:FBgn0087002 Length:3351 Species:Drosophila melanogaster
Sequence 2:XP_031753611.1 Gene:vwf / 100492314 XenbaseID:XB-GENE-921798 Length:2876 Species:Xenopus tropicalis


Alignment Length:1223 Identity:226/1223 - (18%)
Similarity:412/1223 - (33%) Gaps:394/1223 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1884 PIIISSIAELLGDRKGKVLFEILNLADLDIKINSEASYVSIDEFYIIVNWSSKKLKLDGYELEAR 1948
            |:.|:...|::...    ::|...:.||...::. :|.:|::||.::.::      :.|...:..
 Frog  1283 PVDITPTTEVVDTS----IYECNKMMDLVFLVDG-SSKLSMEEFEVVKDF------IVGIMEKIH 1336

  Fly  1949 AQSKNIKIQLKNENGIIFSGTA--TYALK--KELNKTIIDGQGKVQYQGKALSGNFKLTR--QHF 2007
            ...|.|::.:.:    .:|.|.  ::.||  |:|:: ::.....::|.|...|...:..:  .|:
 Frog  1337 ISQKKIRVSVVH----YYSATTDRSFGLKDNKKLSE-LVKMVKSMKYVGSLTSSAPEALKYASHY 1396

  Fly  2008 DFG---TDREVGFSYTFMGNLGSKNGLGTLKITNKEFNTKFSVCEEKRQCTNLIVQSIVSIDEQK 2069
            .||   .|....|:.....:...|:..|.:|..:            ||:.|.:.|.....|:.::
 Frog  1397 VFGEAPRDNAPKFAMLLTASKSPKSVAGIMKAIH------------KRKITVIPVGLGPDINMEE 1449

  Fly  2070 LDAVEHTTLIIVDLRDFGYPYEFELKSQNTRQGLKYQY--HLDSFIITGNNFKYQFTANVQPTSS 2132
            ::       ||..:.....||.|         |..|:.  ..|..|      .|......:|...
 Frog  1450 IN-------IIQKMSPKNKPYIF---------GSVYELLDRRDEII------HYLCDLVPEPPKP 1492

  Fly  2133 TIKLALPKRQILFETTQKI---PADGSLFGRYEQTASFFIDKLQKPDDVARFSAIVD----VTGT 2190
            ||. :..|..:..:..||:   |.:..      .||:...:  .||...|.:...:|    :.|:
 Frog  1493 TIP-STKKPTVTEKPVQKVTIAPVEKG------PTATQIPE--VKPTTQASWDKTIDLVFIIEGS 1548

  Fly  2191 ERVAFNANGKLKFEHPTIRPLSISGQLNGDVNQQIASAEVIFDIFRLPEQKVVGNSELRNSRSQN 2255
            ::|                         |::|         |:..::..:|::...::    |:.
 Frog  1549 DKV-------------------------GEIN---------FNKTKIFLEKMIQKLQI----SEE 1575

  Fly  2256 GFNIAYITTVKSAGLQFQY---QINSNAAVDIEAHEYNIGLELNNGEIDVKAISFLNKEKFEISL 2317
            ..:|..|....:..:::.:   |...:....|...||..|...|.|    |||:::.:..|....
 Frog  1576 TIHITIIQFSFTVTIEYSFSEKQTKEDIIQRIRKMEYRGGNATNTG----KAINYVTEHTFTTDT 1636

  Fly  2318 SESN--KHIIYIVGDFSKQNHYAKLNTKVQILDKNPIEITS---EVQPN----SAKIILKRQDFI 2373
            ...|  .|::|:|..          |....|:.|.|.:|..   .|.||    ..::|...:|  
 Frog  1637 GSRNDIPHLVYMVTS----------NPATDIITKGPSDINMVPIAVGPNVDIQELELIANSRD-- 1689

  Fly  2374 DGTAEVKLGKEFKVDVIGSGKQLF-----NGRVALDATNFLQTNYFINEDHLNGFWHIVESEINK 2433
                |:.|.:::  ||:.|...:.     ..|.:|..|.|..|.                     
 Frog  1690 ----EIILIEDY--DVLISDAPVLVLEKCCSRKSLSTTPFPPTT--------------------- 1727

  Fly  2434 DSEYISENIKERLKKSRQVTDKIVKLAKEAGPDFSKLQGKLLDYKNDIVQELEADQSI-APIIDG 2497
                        ...::.:||...|                   ..|::..|:...|: |...:.
 Frog  1728 ------------TPATQPITDNCEK-------------------PMDVIFVLDGSSSVRASQFEE 1761

  Fly  2498 IRTLFKKIAGIVDDINKAISEILEKAQKSIVDIYDKLQALWKDSLLKAWEDFIITVQKLISTLKT 2562
            ::|..|   ..:..:|..:.    ..|.|:      ||..|::.|..||.|              
 Frog  1762 MKTFVK---AFIKKVNIGVG----ATQVSV------LQYGWRNILEIAWTD-------------- 1799

  Fly  2563 EFIKICTQSFKDLLSALEKY-----GPALKNYGKAIGE-IVKPINDAAQEV---------IKIVV 2612
                  .|..:.||.|::..     |||      .||| ::..:..|..||         |.::|
 Frog  1800 ------PQEKESLLKAVDNIQKAEDGPA------KIGEALLFGVRTAMSEVHGARPGSTKIAVIV 1852

  Fly  2613 -------NAAEGVTHEFKQYVASLPSFESIRNEFNDKVKVLKLFEKATELTNSLFDQINILPQTP 2670
                   ..||.........|:..|.....|.: :.::|||     |....|....::.|:...|
 Frog  1853 ITDVSVDQVAEAANSAVINRVSVFPIGIGTRYD-SQQLKVL-----AGPSANKKITKLQIIEDLP 1911

  Fly  2671 E----TSEFLQKLHDYLIAKLKQEHIDNEKYIEELGQLLIKAVRSIWVSIRSTYPGSSDHVIDFQ 2731
            .    ::||:.|    :..:.....||.|.                    :...||        .
 Frog  1912 TMVTLSNEFINK----ICTEFATVCIDEEG--------------------KQRKPG--------D 1944

  Fly  2732 SWIGSLTHSFDSLAVLP---SILSFRSSILNCLLNENWDVVFNKKLLYSWIFFNDFELRGHVVDG 2793
            .|:  ||....|:..||   ::|  .|..:||           :|:.......|...::.....|
 Frog  1945 KWM--LTDKCHSVTCLPDGKTLL--ESHKVNC-----------EKIPKPMCHNNLPAMKIEETCG 1994

  Fly  2794 --------------KHIFTFDGLNFAYPGNCKYILAQDSVDNNFTIIG----QLTNGK--LKSIT 2838
                          :||.|||||:|...|.|.|:|..|.|.:...|:.    ..||.:  :||:.
 Frog  1995 CRWTCPCMCMGSSTRHIVTFDGLDFKLMGACSYVLFHDEVHDVKVILHNAECNTTNHQTCMKSVE 2059

  Fly  2839 LIDREGSYFEVADNLALKLNGNLVEYPQHLSGLHAWRRFYTIHLYSEY-------GVGIVCT--- 2893
            :...:.|.. ::.|:.:.:||::|..|.....       :.:.||.|.       .:|.|.|   
 Frog  2060 VKHNKYSIL-LSSNMQVSVNGDIVPLPYANDN-------FEVTLYGEIVHEVKIPQLGFVFTFTP 2116

  Fly  2894 -SDLKVCHININGFYTSKTRGLLGNGNAEPYDDFLLIDGTLAENSAALGNDYGV----GK----- 2948
             ::..|..:|...| :.:|.||.|..:....:||.|.||::..:|:....::.|    |:     
 Frog  2117 ANNEFVLQLNPAAF-SLRTSGLCGICDQNTVNDFTLSDGSVTTDSSKFIKEWTVVDSLGRTCETK 2180

  Fly  2949 ----CTAIEFDNNQFKSSKRQEMCSELFGIESTLAFNFITLDSRPYRKACDIA 2997
                ||.......:...||..|.|..:|             ..:||...|:.|
 Frog  2181 PDKACTQPISSECKIMLSKTFEACHTIF-------------PPKPYFTVCEEA 2220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
apolppNP_001259085.1 Vitellogenin_N 43..573 CDD:279663
DUF1943 605..911 CDD:286281
DUF1081 932..1031 CDD:283982
VWD 2789..2931 CDD:214566 42/172 (24%)
vwfXP_031753611.1 VWD 68..211 CDD:395046
C8 259..324 CDD:214843
TIL 328..381 CDD:410995
VWC_out 383..>419 CDD:214565
VWD 410..573 CDD:214566
C8 616..681 CDD:400886
TIL 685..740 CDD:410995
VWC 861..>895 CDD:327433
VWD 888..1044 CDD:214566
C8 1085..1159 CDD:214843
TIL 1178..1228 CDD:410995
VWA_N2 1230..1304 CDD:406551 4/24 (17%)
vWFA_subfamily_ECM 1304..1465 CDD:238727 35/191 (18%)
VWA 1540..1700 CDD:395045 38/219 (17%)
VWA 1743..1915 CDD:395045 43/216 (20%)
VWD 2003..2155 CDD:395046 42/160 (26%)
C8 2193..2253 CDD:400886 9/41 (22%)
TIL 2257..2310 CDD:410995
VWC 2318..2377 CDD:327433
CT 2795..2873 CDD:214482
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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