DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Actbeta and bmp3

DIOPT Version :9

Sequence 1:NP_651942.2 Gene:Actbeta / 43826 FlyBaseID:FBgn0024913 Length:946 Species:Drosophila melanogaster
Sequence 2:NP_001071233.1 Gene:bmp3 / 777717 ZFINID:ZDB-GENE-030131-7192 Length:452 Species:Danio rerio


Alignment Length:492 Identity:102/492 - (20%)
Similarity:165/492 - (33%) Gaps:170/492 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   519 LKSHHNSSPKELKSG-AVRKVNGINGTQMNENALKKSTYPIDINHSIDNKTHTGKNGE-MSHNDY 581
            |.:.:.|:...||.| .||...|..|| :|...|:           |.|.|...|:.: :|...:
Zfish    65 LYAKYTSAGFPLKDGNTVRSFKGHLGT-INNRQLQ-----------IFNLTSLTKSEDVLSATLH 117

  Fly   582 EYFNDYSVQTHDKNRYHEGRSSIGYQPAIHNIEYENQKGHHESFADDHENID------------- 633
            .|..|....:|        |.|.....|.||:..:           .|.::|             
Zfish   118 YYIGDLHNSSH--------RCSKHKSCAQHNLRRQ-----------AHVHLDVWSFSLVKNTTRT 163

  Fly   634 -----------HEDFFGNTQEIITFAEEGTQYRQYRILEFSAQNR-RVPSQK-LSIRSAQIHI-- 683
                       |.||.....:.||......::....::..:..:| ..|.:| ||.||..|.:  
Zfish   164 IGHFPINISTMHWDFISWQWKDITRVVNQAKHHDQLLIGININSRGHQPWKKLLSDRSPYILVYA 228

  Fly   684 ---RIDKPHS----LWIEKAKSLPEKHLLNTKRKWGANKPHHRIKIWVFQLSTSINITEKGIDKA 741
               .|.:|.|    |...|::.||..|:|.:         |:|                      
Zfish   229 NDSAISEPESVVSTLQRHKSRLLPNLHMLES---------HNR---------------------- 262

  Fly   742 IIFRASFQVDPKNLGWQKFDLTDTIREWYGHTSHEKLRLLIDCTGCGGRYSLHLFQTSKLRGNSS 806
               .||.|                      |.|.....:|:.            .|.::|.|...
Zfish   263 ---NASAQ----------------------HRSRRSTNILLP------------LQNNELPGPEY 290

  Fly   807 DY-LST------------------------NPNRPFLVLHTESSRTRRVRRRAVDCGGALNGQCC 846
            .| :.|                        ||.....:|..:....::.|::..:    ....|.
Zfish   291 PYEIPTWDEASPYDPMESKTVKRPRKKPRKNPRHKNPLLQFDEQTIKKARKKQWN----EPRNCA 351

  Fly   847 KESFYVSFKALGWDDWIIAPRGYFANYCRGDCTGSFRTPDTFQ-TFHAHFIEEYRKMGLMNGM-R 909
            :....|.|..:||.:|||:|:.:.|.||.|.|  .|..|.:.: :.||......|.:|::.|: .
Zfish   352 RRYLKVDFADIGWSEWIISPKSFDAYYCSGSC--QFPMPKSLKPSNHATIQSIVRAVGVVPGIPE 414

  Fly   910 PCCAPIKFSSMSLIYYGDD-GIIKRDLPKMVVDECGC 945
            |||.|.|.||:|::::.:| .::.:..|.|.||.|.|
Zfish   415 PCCVPEKMSSLSILFFDEDKNVVLKVYPNMTVDSCAC 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActbetaNP_651942.2 TGFb_propeptide 370..>509 CDD:279078
TGF_beta 843..945 CDD:278448 35/104 (34%)
bmp3NP_001071233.1 TGFB 350..452 CDD:214556 36/104 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11848
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

Return to query results.
Submit another query.