DRSC/TRiP Functional Genomics Resources

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Protein Alignment Actbeta and admp

DIOPT Version :9

Sequence 1:NP_651942.2 Gene:Actbeta / 43826 FlyBaseID:FBgn0024913 Length:946 Species:Drosophila melanogaster
Sequence 2:NP_001039157.1 Gene:admp / 733983 XenbaseID:XB-GENE-485379 Length:390 Species:Xenopus tropicalis


Alignment Length:461 Identity:102/461 - (22%)
Similarity:170/461 - (36%) Gaps:150/461 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   527 PKELKSGAVRKVNGINGTQMNENAL----KKSTYPIDINHSIDNKTHTGKNGEMSHNDYEYFNDY 587
            |:.::|.|::::..:.|.:...:.|    :...|.:|:.:::.::....|:.::.          
 Frog    37 PELVRSQALKRLLEVFGIEEPPHPLQHVKQPPQYMVDLYNTVADEDGVTKDPDLL---------- 91

  Fly   588 SVQTHDKNRYHEGRSSIGYQPAIHNIEYENQKGHHESFADDHENIDHEDFFGNTQEIITFAEEGT 652
                       ||.:...:...||:                    ||..|..|...:        
 Frog    92 -----------EGNTVRSFFDKIHS--------------------DHMHFLFNLSTV-------- 117

  Fly   653 QYRQYRILEFSAQNRRVPSQKLSIRSAQIHIRIDKPHSLWIEKAKSLPEKHLLNTKRKWGANKPH 717
                       |:|.:       |.:|::|          :.|.|..|.:.        ...|.|
 Frog   118 -----------ARNEK-------ILTAELH----------LFKLKPRPSEQ--------AYFKRH 146

  Fly   718 HRIKIWVFQLSTSINITEKGIDKAII-------FRASFQVDPKNLGWQKFDLTDTIREWYGHTSH 775
            |..:|.|:.:          :||..|       ..:|..|...:.||:.|.:|..:|.|...:::
 Frog   147 HFCQISVYLV----------LDKNKIQLPQGRKLLSSKLVPIHSSGWEVFSITQAVRAWNDESAN 201

  Fly   776 EKLRLLIDCTGCGG--------RYS------------LHLFQTSKLRG-----NSSD-YLSTNPN 814
            .  .:|:.....||        |::            |.||.....||     |..| .:...||
 Frog   202 H--GILVTVRNLGGAQVDPNIIRFASGRDHHESKQPMLVLFTDDGRRGIVSVNNQPDGQMVPLPN 264

  Fly   815 RPFLVLHTESSRTRRVRRRAVDCGGALNGQCCKESFYVSFKALGWDDWIIAPRGYFANYCRGDC- 878
            .||:   ..|:|||  ..|:|:..|.|  .|.:...||.|:.:||..|||:||||.|.:|:|.| 
 Frog   265 GPFV---PASNRTR--ISRSVEDDGQL--PCQRHPLYVDFEEIGWSGWIISPRGYNAYHCKGSCP 322

  Fly   879 --TGSFRTPDTFQTFHAHFIEEYRKMGLMNGM-RPCCAPIKFSSMSLIYYGDD-GIIKRDLPKMV 939
              .|....|    |.||........:.|..|: .|||.|.|..|::|:|:.|| .::.:....||
 Frog   323 FPLGQNMRP----TNHATVQSIINALKLTKGVSSPCCVPDKLFSINLLYFDDDENVVLKQYDDMV 383

  Fly   940 VDECGC 945
            ...|||
 Frog   384 AGSCGC 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActbetaNP_651942.2 TGFb_propeptide 370..>509 CDD:279078
TGF_beta 843..945 CDD:278448 37/106 (35%)
admpNP_001039157.1 TGFb_propeptide 46..240 CDD:366248 42/290 (14%)
TGF_beta_ADMP 287..390 CDD:381643 39/107 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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