DRSC/TRiP Functional Genomics Resources

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Protein Alignment Actbeta and gdf10a

DIOPT Version :10

Sequence 1:NP_651942.2 Gene:Actbeta / 43826 FlyBaseID:FBgn0024913 Length:946 Species:Drosophila melanogaster
Sequence 2:XP_691459.3 Gene:gdf10a / 563003 ZFINID:ZDB-GENE-090312-17 Length:441 Species:Danio rerio


Alignment Length:485 Identity:90/485 - (18%)
Similarity:147/485 - (30%) Gaps:203/485 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   576 MSHNDYEYFNDYSVQTHDKNRYHEGRSSIGYQPAIHNIEYENQKGHHESFADDHENIDHEDFFGN 640
            :|.:.|:.:..|:.   :.||..||.:.                   .||....||::       
Zfish    44 LSQHMYKLYEKYNT---EPNRLKEGNTV-------------------RSFKAKPENVE------- 79

  Fly   641 TQEIITFAEEGTQYRQYRILEFSAQNRRVPSQKLSIRSAQIHIRIDK-PHSLWIEKAKSLPEKHL 704
                        |...||:...|.|...|      |.|:..|...|| |.               
Zfish    80 ------------QRVSYRLNLTSLQGSEV------ILSSTFHFFFDKRPR--------------- 111

  Fly   705 LNTKRKWGANK---PHHRI-------KIWVFQLSTSINITEKGIDKAIIFRASFQVDPKNLG-WQ 758
               :|.|...:   |..||       .|.:...|.|:|.|...:      ..:..|.|...| ||
Zfish   112 ---QRSWFCKRFKNPSCRITNFPLLPSIRLLFRSPSVNSTTGSL------LGNLTVVPHRRGTWQ 167

  Fly   759 KFDLTDTIREWYGHTSHEKLRLLIDCT-GCGGRYSLHLFQTSK-----LRGNSSDYLSTNPNR-- 815
            ..|::..::|     :.::.:|||... ..|.:|..:..|.|.     |...::|...:.||.  
Zfish   168 SKDVSVIMKE-----ARDRNQLLITLEFDYGEQYQRYQDQLSPSTLPYLLVYANDLAISEPNSVA 227

  Fly   816 -------PFL------------------------------------------------------- 818
                   ||:                                                       
Zfish   228 VSLQRYDPFIGDQQPAQSPDSSPDIRVKRELELDFTDPIENNELPEVEYNSFKQHDMWESAYYPL 292

  Fly   819 ------------------------VLHTESSRTRRVRRRAVDCGGALNGQ------CCKESFYVS 853
                                    ||..:....::.|||          |      |.:....|.
Zfish   293 KPKPFKKERRRKGQEHTDGFGKSQVLRFDEKTMKKARRR----------QWKEPRSCSRRYLKVD 347

  Fly   854 FKALGWDDWIIAPRGYFANYCRGDCTGSFRTPDTFQ-TFHAHFIEEYRKMGLMNGM-RPCCAPIK 916
            |..:||::||::|:.:.|.||.|.|  .|..|...: :.||......:.:|::.|: .|||.|.|
Zfish   348 FADIGWNEWILSPKSFDAFYCAGTC--EFPIPKVVRPSNHATIQSIVKAVGIIPGIPEPCCVPEK 410

  Fly   917 FSSMSLIYYGDD-GIIKRDLPKMVVDECGC 945
            ...:|:::..:. .|:.:..|.|.|:.|.|
Zfish   411 MKPLSVLFVDESKNIVLKIYPNMSVETCAC 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActbetaNP_651942.2 TGF_beta_INHB 845..945 CDD:381630 30/102 (29%)
gdf10aXP_691459.3 TGF_beta_GDF10 330..441 CDD:381664 34/123 (28%)

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