DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Actbeta and bmp7b

DIOPT Version :9

Sequence 1:NP_651942.2 Gene:Actbeta / 43826 FlyBaseID:FBgn0024913 Length:946 Species:Drosophila melanogaster
Sequence 2:NP_001070614.2 Gene:bmp7b / 557567 ZFINID:ZDB-GENE-060929-328 Length:427 Species:Danio rerio


Alignment Length:529 Identity:113/529 - (21%)
Similarity:184/529 - (34%) Gaps:180/529 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   467 DFTFNISKNNVYGKVLRNR--SLERIDKKNSFLNGWTENRQLKINSQIASMPIELKSH----HNS 525
            :||.:   |.|:...:..|  |.||.:.:...|:             |..:|...:.|    ||:
Zfish    28 NFTLD---NEVHSSFIHRRLKSQERREMQREILS-------------ILGLPHRPRPHLHGKHNA 76

  Fly   526 SPKELKSGAVRKVNGINGTQMNENALKKSTYPIDINHSIDNKTHTGKNGEMSHNDYEYFNDYSVQ 590
            :|                           .:.:|:.:::..:      |:.....|.|...::.|
Zfish    77 AP---------------------------MFMLDLYNAMSTE------GDEEGFSYPYKPVFTTQ 108

  Fly   591 ------THDKNRYHEGRSSIGYQPAI-HNIEYENQKGHHESFADDHENIDHEDFFGNTQEIITFA 648
                  ..|.|..::....:.:...: |:.|:...:.||..|..|...|..       .|.:|.|
Zfish   109 GPPIATLQDNNFLNDADMVMSFVNLVEHDKEFLPVRRHHREFRFDLSKIPE-------GEAVTAA 166

  Fly   649 EEGTQYRQYRILEFSAQNRRVPSQKLSIRSAQIHIRIDKPHSLWIEKAKSLPEKHLLNTKRKWGA 713
            |    :|.|:  :|..::....:.::||... :...:|:...|:           ||:::..|.|
Zfish   167 E----FRIYK--DFVPEHFDNETFRISIYQV-LEEHLDRDSDLF-----------LLDSRVIWAA 213

  Fly   714 NKPHHRIKIWVFQLSTSINITEKGIDKAIIFRASFQVDPKNLGWQKFDLTDTIREWYGHTSHE-K 777
            .:                                        ||..||:|.|...|..:.... .
Zfish   214 EE----------------------------------------GWLVFDITVTSNHWVLNPGRNLG 238

  Fly   778 LRLLID----------CTGCGGR--------YSLHLFQTSK-----LRGNSSDYLSTNPNRPFLV 819
            |:|.:|          ..|..||        :.:..|:.::     :|.........||||....
Zfish   239 LQLALDSLDGQSVNPWVAGLVGRSGPQSKQPFMVAFFKATEVHIRSIRSAQGGNKQRNPNRSKTA 303

  Fly   820 LHTESSRTRRVRRRAVDCGGALNGQCCKE-SFYVSFKALGWDDWIIAPRGYFANYCRGDCT---G 880
            ...|:.|...:...:    .|...|.||: ..||||:.|||.||||||.||.|.||.|:|.   .
Zfish   304 KGQEALRVANIAENS----SADQKQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCMGECAFPLN 364

  Fly   881 SFRTPDTFQTFHA------HFI--EEYRKMGLMNGMRPCCAPIKFSSMSLIYYGD-DGIIKRDLP 936
            |:..    .|.||      |||  |...|        |||||.:..::|::|:.| ..:|.:...
Zfish   365 SYMN----ATNHAIVQTLVHFINPETVPK--------PCCAPTQLHAISVLYFDDSSNVILKKYR 417

  Fly   937 KMVVDECGC 945
            .|||..|||
Zfish   418 NMVVRACGC 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActbetaNP_651942.2 TGFb_propeptide 370..>509 CDD:279078 9/43 (21%)
TGF_beta 843..945 CDD:278448 45/114 (39%)
bmp7bNP_001070614.2 TGFb_propeptide 32..274 CDD:307025 55/355 (15%)
TGF_beta 326..426 CDD:306518 44/111 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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