DRSC/TRiP Functional Genomics Resources

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Protein Alignment Actbeta and nodal1

DIOPT Version :9

Sequence 1:NP_651942.2 Gene:Actbeta / 43826 FlyBaseID:FBgn0024913 Length:946 Species:Drosophila melanogaster
Sequence 2:NP_001016321.1 Gene:nodal1 / 549075 XenbaseID:XB-GENE-487169 Length:403 Species:Xenopus tropicalis


Alignment Length:430 Identity:97/430 - (22%)
Similarity:162/430 - (37%) Gaps:147/430 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   593 DKNRYHEGRSSIGYQPAIH-NIEYENQKG---HHESFADDHENIDHEDFFGNTQEIITFAEEGTQ 653
            |.||:|.......|...:: |:...|..|   .|.:...:::.:           :..||:...:
 Frog    43 DGNRHHRDMKYPFYMMQLYQNLVMANDTGLARGHNTATKEYDTV-----------LSLFAKRCME 96

  Fly   654 YRQYRILEFSAQNRRVPSQKLSIRSAQIHIRIDKPHSLWIEKAKSLPEKHLLNTKRKWGANKPHH 718
            ..:...|.|   :....|:...::.|:  :||..||   ||.:                     |
 Frog    97 SEKRWTLSF---DMSAVSKSSELKLAE--LRIQLPH---IEMS---------------------H 132

  Fly   719 RIKIWVFQLSTSINITEKGIDKAIIFRASFQVDP---KNLGWQKFDLTDTIREWY---------- 770
            .:.:.|:.       |..|.:.  ::..||:.:|   |...|:.|::|..::.::          
 Frog   133 NVTVDVYH-------TRDGEEN--LYLGSFEANPFSTKGSPWKVFNVTRILQHYFKEGQDIKSEY 188

  Fly   771 -----------GHTSHEKLRLLIDCTGCGGRYSLHLFQTSKLRGNSSDYLST-----------NP 813
                       |.:|.|    .:|..|...:|:.|   .:.||    .||||           .|
 Frog   189 LRTKDRAERGSGMSSAE----FLDSPGDSPQYNPH---HTPLR----RYLSTEGVMLVLFTKVKP 242

  Fly   814 N-----RPFLVLHTESSR------------TRRVRR---------------RAVDCGGALNGQCC 846
            :     .|.|:...|||:            .||.||               |.||.|..|   |.
 Frog   243 SVNHIGFPSLIKTAESSKYVDMEKASRMPGIRRHRRNKNEKHHLSMGSIPSRHVDNGKPL---CR 304

  Fly   847 KESFYVSFKALGWDDWIIAPRGYFANYCRGDCTGSFRTPDTFQ-TFHAHF---IEEYR--KMGLM 905
            :....|:|:.:||.:||:.|:.|.|..|.|.|  .....:||: |.||:.   ::.|:  |:.. 
 Frog   305 RVDMIVNFEDIGWGNWIVYPKKYNAYRCEGAC--PIPLNETFKPTNHAYMKSVVKLYQPEKVEC- 366

  Fly   906 NGMRPCCAPIKFSSMSLIYYGDDGIIKRDLPKMVVDECGC 945
                |.|.|||.|.:|::||..|.::.|...:|:|:||||
 Frog   367 ----PLCVPIKMSPLSMLYYEGDEVVLRHHQEMIVEECGC 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActbetaNP_651942.2 TGFb_propeptide 370..>509 CDD:279078
TGF_beta 843..945 CDD:278448 35/107 (33%)
nodal1NP_001016321.1 TGFb_propeptide 46..218 CDD:279078 36/224 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 195..220 7/31 (23%)
TGFB 303..403 CDD:214556 37/107 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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