DRSC/TRiP Functional Genomics Resources

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Protein Alignment Actbeta and Lefty1

DIOPT Version :10

Sequence 1:NP_651942.2 Gene:Actbeta / 43826 FlyBaseID:FBgn0024913 Length:946 Species:Drosophila melanogaster
Sequence 2:NP_001102550.1 Gene:Lefty1 / 498299 RGDID:1561867 Length:368 Species:Rattus norvegicus


Alignment Length:311 Identity:68/311 - (21%)
Similarity:111/311 - (35%) Gaps:77/311 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   659 ILEFSAQNRRVPSQKLSIRSAQIHIRIDKPHSLWIEKAKSLPEKHLLNTKRKWGANKPHH---RI 720
            :|.|..:.|..|:.:|    .|..:|:.:         :.:|...|...||.    .||.   |:
  Rat    98 LLVFGMEQRLPPNSEL----VQAVLRLFQ---------EPVPRTALRRQKRL----SPHSARARV 145

  Fly   721 KI-WVFQLSTSINITEKGIDKAIIFRASFQVDPKNLGWQKFDLTDTIREWYGHTSHEKLRLLIDC 784
            .| |       :...|.|.::..:..:.. |.....||:.||:|:.:..|. ..|..:..||:..
  Rat   146 TIEW-------LRFREDGSNRTALIDSRL-VSIHESGWKVFDVTEAVNFWQ-QLSRPRQPLLLQV 201

  Fly   785 T------GCGGRYSLHLFQTSKLRGNSSDYLSTNPNRPFLVLHTESSRTRRVRRRAVDCGGALN- 842
            :      | .|.:|.|.......:|...   ......|.|.|||...:         |.|...| 
  Rat   202 SVQREHLG-PGTWSAHKLVRFAAQGTPD---GKGLGEPQLELHTLDLK---------DYGAQGNC 253

  Fly   843 ---------GQCCKESFYVSFKALGW-DDWIIAPRGYFANYCRGDCTGSFRTPDTFQTFHAHFIE 897
                     .:||::..|:..:.:.| ::||:.|.|:....|.|.|   .:.|::. |....|: 
  Rat   254 DPETPVTEGTRCCRQEMYLDLQGMKWAENWILEPPGFLTYECVGSC---LQPPESL-TIRWPFL- 313

  Fly   898 EYRKMGLMNGMRPCCAPIKFSSMSLIYYGDDGIIKR---DLPKMVVDECGC 945
                     |.|.|.|....|...::...:||..:.   .||.|.|..|.|
  Rat   314 ---------GPRQCVASEMTSLPLIVSIKEDGRTRPQVVSLPNMRVQRCSC 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActbetaNP_651942.2 TGF_beta_INHB 845..945 CDD:381630 26/103 (25%)
Lefty1NP_001102550.1 TGFb_propeptide <62..203 CDD:480997 28/130 (22%)
TGF_beta_LEFTY1_2 264..355 CDD:381636 26/104 (25%)

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