DRSC/TRiP Functional Genomics Resources

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Protein Alignment Actbeta and amh

DIOPT Version :9

Sequence 1:NP_651942.2 Gene:Actbeta / 43826 FlyBaseID:FBgn0024913 Length:946 Species:Drosophila melanogaster
Sequence 2:NP_001007780.1 Gene:amh / 493624 ZFINID:ZDB-GENE-050706-192 Length:549 Species:Danio rerio


Alignment Length:573 Identity:103/573 - (17%)
Similarity:182/573 - (31%) Gaps:176/573 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   508 INSQIASMPIELKSHHNSSPKELKSGAVRKVNGINGTQM--NENALKKSTYPIDINHSID---NK 567
            |.|..|::..|   ..:::||      |..::.:||.|:  .:.|......|.|.:.:.|   ||
Zfish    17 IGSYCATVRHE---EQDNNPK------VNPLSELNGDQLEVRDLACVHRQQPTDQHATEDTPFNK 72

  Fly   568 THTGKN---------GEMSHNDYEYFNDYSVQTHDKNRYHEGRSSIGYQPAIHNIEYENQKGHHE 623
            .....|         ||:...|  :....|.:|......|..:|.:..|..:        ||.|.
Zfish    73 EQKTLNEFLSALKSAGELGKMD--FLGTCSSETQSSQVSHLVQSVLQKQSGL--------KGVHA 127

  Fly   624 S----FADDHENI-------DHEDFFGNTQEIITFAEEGTQYRQYRILEFSAQNRRVPSQKLSIR 677
            :    .||:.|.|       .|....|....::.|:....:....|: :|::|:....:|.:.|.
Zfish   128 TEDIWDADNEEGITLTLTFPKHSLPAGPASVMLLFSVNPVKGDSLRV-QFNSQSIHPNTQTVCIS 191

  Fly   678 SA-------------QIHIRIDKPHSLWIEKAKSLPEKHLLNTKRKWGA---------------- 713
            .:             .||:           |.|::.|..:.:.:||...                
Zfish   192 ESTRFLIVTGGWSHGHIHL-----------KLKTMVETSMDDNRRKLSVSELNEVLMRKVDGSST 245

  Fly   714 ------------NKPH---HRI--------KIWVFQ----------LSTSINITEKGIDKAIIFR 745
                        ::||   |||        :.::|.          |..|.:.|.:....|:...
Zfish   246 TIKPVLLFLSDLDEPHLKRHRIPQDERLPSRTYLFLCELQKFLRDILPQSKSTTPQDDPSAVSLD 310

  Fly   746 ASFQVDPKNLGWQKFD---------LTDTI----REWYGHTSH-----------EKLRLLIDCTG 786
            ....:.|..||....:         .|.|:    :...|..:|           ..||:.:|...
Zfish   311 TLHSLPPLRLGVSSTESLLSGLVNSSTPTVFVFPQRQQGLQTHRVEVTLDSPLLSVLRMRLDEAM 375

  Fly   787 C------GGRYSL----HLFQTSKLRGNSSDYLSTNPN------RPFLVL--------HTESSRT 827
            .      .||..:    .|.:.|.|..:..|..:...:      |..|:|        :.||.|.
Zfish   376 AQVKQQEAGRKMIDRLQKLTELSALSPDGEDSEAATKDHKEAQYRSVLLLKALQMVLSNWESERA 440

  Fly   828 RRVRRRAVDCGGALNGQCCKESFYVSFKALGWDDWIIAPRGYFANYCRGDCTGSFRTPDTFQTFH 892
            :|..|...| |.:.:.||..:|..||.:     .:.:.|.....|.|.|.|.......:.    |
Zfish   441 QRAARADED-GPSASNQCHLQSLSVSLR-----KFFLEPSRANINNCEGTCGFPLNNANN----H 495

  Fly   893 AHFIEEYRKMGLMNGMRPCCAPIKFSSMSLIYYGDDGIIKRDLPKMVVDECGC 945
            |..:..:.:.|.......||.|:::..:.:|....:.........:|..:|.|
Zfish   496 AVLLNSHIQSGQPVNRSLCCVPVEYDDLCVIELESETTNISYKTNVVATKCEC 548

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity