DRSC/TRiP Functional Genomics Resources

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Protein Alignment Actbeta and nodal3.1

DIOPT Version :9

Sequence 1:NP_651942.2 Gene:Actbeta / 43826 FlyBaseID:FBgn0024913 Length:946 Species:Drosophila melanogaster
Sequence 2:NP_988864.1 Gene:nodal3.1 / 394458 XenbaseID:XB-GENE-5964399 Length:401 Species:Xenopus tropicalis


Alignment Length:552 Identity:106/552 - (19%)
Similarity:169/552 - (30%) Gaps:219/552 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   432 RAFASPGSHLFNGRGGRTDQRSERDPSHHKYRSPFDFTFNISKNNVYGK-----VLRNRSLERID 491
            |...||.|.|   :|..|| ...||  .|..:.| .|...:.:|.:..:     .|.:.:|:..|
 Frog    26 RKAISPASIL---KGPSTD-NGARD--FHGRKFP-HFMMQLYQNIISRRDKDLSNLEHPTLQESD 83

  Fly   492 KKNSFL--------NGWT---------ENRQLKINSQIASMPIELKSH-------HNSSPKE-LK 531
            ...||:        |.||         .|.:||:......:|...|||       |....|| |.
 Frog    84 TVQSFIAKSYTTVGNHWTLFFDMSSISTNNELKLAELRICLPSFGKSHSVTVEIYHTKDTKEKLF 148

  Fly   532 SGAVRKVNGINGTQMNENALKKSTYPIDINHSIDNKTHTGKNGEMSHNDYEYFNDYSVQTHDKNR 596
            .|:.:       |::: :||.......::...:.|....||  .:..::|.......::..:|:.
 Frog   149 MGSFK-------TKIS-SALDADCKVFNLTMVLHNYLIRGK--RLIKDEYIQAKGLLLRDLEKSA 203

  Fly   597 YHEGRSSIGYQPAIHNIEYENQKGHHESFADDHENIDHEDFFGNTQEIITFAEEGTQYRQYRILE 661
            ..:|         ..|::...|..||.|           ||......::.||:|.:|        
 Frog   204 AEKG---------AENVDTLKQDKHHVS-----------DFAAERIILVVFAKERSQ-------- 240

  Fly   662 FSAQNRRVPSQKLSIRSAQIHIRIDKPHSLWIEKAKSLPEKHLLNTKRKWGANKPHHRIKIWVFQ 726
                                                                .||          
 Frog   241 ----------------------------------------------------AKP---------- 243

  Fly   727 LSTSINITEKGIDKAIIFRASFQVDPKNLGWQKFDLTDTIREWYGHTSHEKLRLLIDCTGCGGRY 791
                                    ||.:||.|.|.|.      ||...:..              
 Frog   244 ------------------------DPPSLGKQLFPLK------YGMADNAN-------------- 264

  Fly   792 SLHLFQTSKLRGNSSDY----LSTNPNRPFLVLHTESSRTRRVRRRAVDCGGALNGQCCKESFYV 852
            .::.|:  :||.|..:.    :.|.|.:|.                     ..:..:|.|...:|
 Frog   265 KVNGFR--RLRRNKKEKTRMDVGTTPPKPV---------------------EEIKPKCRKVDMFV 306

  Fly   853 SFKALGWDDWIIAPRGYFANYCRGDCTGSFRTPDTFQTFHAHFIEEYRK--MGLMNGMR---PCC 912
            .|:.:||..||:.|:.|.|..|...|.......|....:      .|.|  :.|.:..|   |.|
 Frog   307 DFQKIGWGSWIVYPKAYNAYRCESACAVPLNETDDATNY------SYIKSLLPLSDTERRECPSC 365

  Fly   913 APIKFSSMSLIYYGDDGIIKRDLPKMVVDECG 944
            .|:|..|||::||.::..|.|...:|:|:|||
 Frog   366 VPVKMRSMSMLYYENEEFILRHHEEMIVEECG 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActbetaNP_651942.2 TGFb_propeptide 370..>509 CDD:279078 25/98 (26%)
TGF_beta 843..945 CDD:278448 34/107 (32%)
nodal3.1NP_988864.1 TGFb_propeptide 53..>139 CDD:279078 18/86 (21%)
TGFB 299..397 CDD:214556 32/103 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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