DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Actbeta and gbb

DIOPT Version :9

Sequence 1:NP_651942.2 Gene:Actbeta / 43826 FlyBaseID:FBgn0024913 Length:946 Species:Drosophila melanogaster
Sequence 2:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster


Alignment Length:517 Identity:111/517 - (21%)
Similarity:177/517 - (34%) Gaps:191/517 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   501 TENRQLKINSQ------IASMPIELKSHHNSSPKELKSGAVRKVNGINGTQMNENALKKST--YP 557
            :|:.:|.::.:      ||..|..|.||..|                         |:||.  :.
  Fly    57 SEDDKLDVSYEILEFLGIAERPTHLSSHQLS-------------------------LRKSAPKFL 96

  Fly   558 IDINHSIDNKTHTGKNGEMSHNDYEYFNDYSVQTHDKNRYHEGRSSIGYQPAIHNIEYENQKGHH 622
            :|:.|.|  ....|.:.:...:|||             |.|..|.|..    :...|.|.||   
  Fly    97 LDVYHRI--TAEEGLSDQDEDDDYE-------------RGHRSRRSAD----LEEDEGEQQK--- 139

  Fly   623 ESFADDHEN--IDHEDFFGNTQEIITFAE------EGTQYRQYRILEFSAQNRRVPSQKLSIRSA 679
             :|..|.:.  ||..|.      |:||..      :..::...|.|.|...|  ||:....: .|
  Fly   140 -NFITDLDKRAIDESDI------IMTFLNKRHHNVDELRHEHGRRLWFDVSN--VPNDNYLV-MA 194

  Fly   680 QIHIRIDKPHSLWIEKAKSLPEKHLLNTKRKWGANKPHHRIKIWVFQLST------------SIN 732
            ::.|..:.....|:.                  ||:   ...|.|:.:.|            |:|
  Fly   195 ELRIYQNANEGKWLT------------------ANR---EFTITVYAIGTGTLGQHTMEPLSSVN 238

  Fly   733 ITEKGIDKAIIFRASFQVDPKNLGWQKFDLTDTIREWY------------GHTSHEKLR-LLIDC 784
            .|...:                 ||.:.::|:.:.||.            .|..:...| :.:|.
  Fly   239 TTGDYV-----------------GWLELNVTEGLHEWLVKSKDNHGIYIGAHAVNRPDREVKLDD 286

  Fly   785 TGCGGR--------YSLHLF---QTSKLRGNSSDY-------------LSTNPNRPFLVLHTESS 825
            .|...|        :.:..|   :..|...:||.:             .|.:||...|:...||:
  Fly   287 IGLIHRKVDDEFQPFMIGFFRGPELIKATAHSSHHRSKRSASHPRKRKKSVSPNNVPLLEPMEST 351

  Fly   826 RTRRVRRRAVDCGGALNGQCCKESFYVSFKALGWDDWIIAPRGYFANYCRGDCTGSFRTPDTFQT 890
            |:                 |..::.|:.||.|||.||||||.||.|.||.|:|...... ....|
  Fly   352 RS-----------------CQMQTLYIDFKDLGWHDWIIAPEGYGAFYCSGECNFPLNA-HMNAT 398

  Fly   891 FHA------HFIEEYRKMGLMNGMRPCCAPIKFSSMSLIYY-GDDGIIKRDLPKMVVDECGC 945
            .||      |.:|. :|:     .:|||||.:..::.::|: .|:.:..:....|:|..|||
  Fly   399 NHAIVQTLVHLLEP-KKV-----PKPCCAPTRLGALPVLYHLNDENVNLKKYRNMIVKSCGC 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActbetaNP_651942.2 TGFb_propeptide 370..>509 CDD:279078 2/7 (29%)
TGF_beta 843..945 CDD:278448 36/108 (33%)
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 62/342 (18%)
TGFB 354..455 CDD:214556 38/108 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11848
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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