DRSC/TRiP Functional Genomics Resources

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Protein Alignment Actbeta and bmp4

DIOPT Version :9

Sequence 1:NP_651942.2 Gene:Actbeta / 43826 FlyBaseID:FBgn0024913 Length:946 Species:Drosophila melanogaster
Sequence 2:NP_571417.1 Gene:bmp4 / 30612 ZFINID:ZDB-GENE-980528-2059 Length:400 Species:Danio rerio


Alignment Length:370 Identity:89/370 - (24%)
Similarity:150/370 - (40%) Gaps:89/370 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   615 YENQKGHHESFADDHENIDHED----------FFGNTQEIITFAEEGTQYRQYRILEFSAQNRRV 669
            |..|.|..|.....|.:.|:.:          .|.:.:.:.....:|:|....|.: |:..:  :
Zfish    80 YRLQSGELEEAGAQHVSFDYPERSTSRANTVRGFHHEEHLEELQSDGSQETPLRFV-FNLSS--I 141

  Fly   670 PSQKLSIRSAQIHIRIDKPHSLWIEKAKSLPEK---HLLNTKRKWGANKPHHRIKIWVF------ 725
            |..:| |.:|::.:     :...|:.|.|.|::   |.|            |||.|:..      
Zfish   142 PEDEL-ISTAELRV-----YRQQIDDAFSDPDQTGDHGL------------HRINIYEVLKAPRE 188

  Fly   726 -QLSTSINITEKGIDKAIIFRASFQVDPKNLGWQKFDLTDTIREWYGHTSHEKLR---LLIDCTG 786
             ||.|.:      :|..::...:.:       |:.||::..:..|    :.||..   |.::...
Zfish   189 GQLITQL------LDTRLVRHNTSK-------WESFDVSPAVLRW----TQEKRSNHGLAVEVVQ 236

  Fly   787 C------GGRY-----SLHLFQTSKLRGNSSDYLSTNPNRPFLVL--HTESSR--TRRVRRRAVD 836
            .      .||:     |:|     .|.....|.|     ||.||.  |...|.  |||.:|....
Zfish   237 MKRNPVQKGRHVRVSRSVH-----PLPDEEWDQL-----RPLLVTFGHDGKSHPLTRRAKRSPKQ 291

  Fly   837 CGGALNGQCCKESFYVSFKALGWDDWIIAPRGYFANYCRGDCTGSFRTPDTFQTFHAHFIEEYRK 901
            .|...|..|.:.:.||.|..:||:|||:||.||.|.||.|:|  .|...|...:.:...::....
Zfish   292 RGRKRNRNCRRHALYVDFSDVGWNDWIVAPPGYQAYYCHGEC--PFPLADHLNSTNHAIVQTLVN 354

  Fly   902 MGLMNGMRPCCAPIKFSSMSLIYYGD-DGIIKRDLPKMVVDECGC 945
            ....|..:.||.|.:.|::|::|..: |.::.::..:|||:.|||
Zfish   355 SVNTNIPKACCVPTELSAISMLYLDETDRVVLKNYQEMVVEGCGC 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActbetaNP_651942.2 TGFb_propeptide 370..>509 CDD:279078
TGF_beta 843..945 CDD:278448 32/102 (31%)
bmp4NP_571417.1 TGFb_propeptide 35..272 CDD:279078 47/239 (20%)
TGFB 300..400 CDD:214556 34/102 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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