DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Actbeta and lft1

DIOPT Version :9

Sequence 1:NP_651942.2 Gene:Actbeta / 43826 FlyBaseID:FBgn0024913 Length:946 Species:Drosophila melanogaster
Sequence 2:NP_571035.1 Gene:lft1 / 30145 ZFINID:ZDB-GENE-990630-10 Length:358 Species:Danio rerio


Alignment Length:386 Identity:87/386 - (22%)
Similarity:144/386 - (37%) Gaps:116/386 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   589 VQTHDKNRY------HEGRSSIGYQPAIHNIEYENQKGHHESFADDHENIDHEDFFGNTQEIITF 647
            :.||.||:|      |..|..... |::..|    .:|     ...:.:|..|..:.:|.     
Zfish    52 IPTHVKNKYISMLKLHHSRKRRSL-PSLAGI----LRG-----IPGNADISGEFVYSDTT----- 101

  Fly   648 AEEGTQYRQYRILEFSAQNRRVPSQKLSIRSAQIHIRIDKPHSLWIEKAKSLPEKHLLNTKRKWG 712
                   ||..:.|.::   |:| :...:..|::.:....||.      :|:||:.         
Zfish   102 -------RQRVVFEMTS---RIP-ENSEVTMAELKLYKKAPHK------RSIPERK--------- 140

  Fly   713 ANKPHHRIKI---WVFQLSTSINITEKGIDKAIIFRASFQVDP-KNLGWQKFDLTDTIREWYGHT 773
            .::|.:..::   ||.......|.|.. :|..:|        | ...||:.||:|..::.|....
Zfish   141 GHRPVNNARVSIYWVEPQKDGSNRTSL-VDSRLI--------PIHETGWKSFDVTQAVQYWSRSR 196

  Fly   774 SHEKLRLLIDCTG-CGGRYSLHLFQTSKLRGNSSDYLSTNPNRPFLVLHT------------ESS 825
            ....:.|.:...| ..|.|:..:.:.........|  .....:|.|||:|            |::
Zfish   197 MEMPMHLEVWIEGERPGSYAAEMAKCVHFTTQDPD--DNTLGKPELVLYTLNLEEFGSSGDCENN 259

  Fly   826 RTRRVRRRAVDCGGALNGQCCKESFYVSFKALGWDD-WIIAPRGYFANYCRGDCTGSFRTPDTFQ 889
            :.|.:              ||:|.::::|:||.|.. |||.|.||.|..|:|.|    |.|.   
Zfish   260 KDREM--------------CCREQYFINFRALTWTQYWIIEPSGYQAFRCKGGC----RQPK--- 303

  Fly   890 TFHAHFIEEYRKMGLMNGMRPCC----APIKFSSMSLIYYGDDGIIK-RDLPKMVVDECGC 945
                      |..|.  |.|.|.    ||:..  |.|:..||...|: .:.|.|:|::|||
Zfish   304 ----------RNYGY--GERKCAVVESAPLPM--MYLVKKGDYTEIEVAEFPNMIVEKCGC 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActbetaNP_651942.2 TGFb_propeptide 370..>509 CDD:279078
TGF_beta 843..945 CDD:278448 35/107 (33%)
lft1NP_571035.1 TGFb_propeptide 24..>192 CDD:366248 37/189 (20%)
TGF_beta_LEFTY1_2 265..350 CDD:381636 35/105 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11848
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.