DRSC/TRiP Functional Genomics Resources

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Protein Alignment Actbeta and tig-3

DIOPT Version :9

Sequence 1:NP_651942.2 Gene:Actbeta / 43826 FlyBaseID:FBgn0024913 Length:946 Species:Drosophila melanogaster
Sequence 2:NP_497318.2 Gene:tig-3 / 266879 WormBaseID:WBGene00021594 Length:251 Species:Caenorhabditis elegans


Alignment Length:280 Identity:67/280 - (23%)
Similarity:102/280 - (36%) Gaps:79/280 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   701 EKHLLNTKRK-WGANKPHHRIKIWVFQLS-TSINITEKGIDKAIIFRASFQVDPKN--------- 754
            :|..|...|| |....|...:|. .||.| .|||..        |..||..:|||:         
 Worm    15 DKITLEPNRKSWTCLTPESLVKD-CFQYSINSINHE--------ILSASLIIDPKDTNISIVVYE 70

  Fly   755 -------------------LGWQKFDLTDTIREWYGHTSHEKLRLLIDCTGCGGRYSLHLFQTSK 800
                               |....||::....:|....|.:|: :.|:.|....:..:       
 Worm    71 VDELFGELQYVDRFEIRETLDKYHFDISHLFHKWMKQKSSDKM-IKIEITNSNTQNVI------- 127

  Fly   801 LRGNSSDYLSTNPNRPFLVLHTESSRTRRVRRRAVDCGGALNGQCCKESFYVSFKALGWDDWIIA 865
               |:...|...||...:|....:     |.....||.|     ||...|||:|..:||:|||::
 Worm   128 ---NALSVLRNAPNFDVMVFQPNT-----VTAGTSDCVG-----CCVIPFYVNFTEIGWNDWILS 179

  Fly   866 PRGYFANYCRGDCTGSFRTPDTFQTFHAHFIEEYRKMGLMNGMRPCCAPIKFSSMSLIYYGDDGI 930
            |.|::||.|          .||..:..:..:.::.|..:.:...|.|||..:.|:.:|.    .:
 Worm   180 PPGFYANVC----------SDTVCSTESDEVYQFMKAAISDLPEPKCAPNYYGSVDMIV----AL 230

  Fly   931 IKRDLPKMVVD-----ECGC 945
            ..||:.|..|.     .|.|
 Worm   231 SPRDIRKTRVHGLRALSCSC 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActbetaNP_651942.2 TGFb_propeptide 370..>509 CDD:279078
TGF_beta 843..945 CDD:278448 30/106 (28%)
tig-3NP_497318.2 TGF_beta_INHB 159..250 CDD:381630 30/104 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S6711
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X477
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.760

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