DRSC/TRiP Functional Genomics Resources

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Protein Alignment Actbeta and nodal

DIOPT Version :10

Sequence 1:NP_651942.2 Gene:Actbeta / 43826 FlyBaseID:FBgn0024913 Length:946 Species:Drosophila melanogaster
Sequence 2:XP_002936396.2 Gene:nodal / 100497218 XenbaseID:XB-GENE-483209 Length:398 Species:Xenopus tropicalis


Alignment Length:429 Identity:100/429 - (23%)
Similarity:156/429 - (36%) Gaps:132/429 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   606 YQPAIHNIEYENQKGHHESFADDHENIDHEDFFGNTQEIITFAEEGTQYRQYRILEFSAQNRRVP 670
            :.|..:::.:.:...|..|...||.|        .|:.:      |::       :|:|  ..:|
 Frog    12 FVPGGNSLGFNSYLKHMSSKPQDHVN--------RTKAV------GSK-------DFAA--LPLP 53

  Fly   671 SQKLSIRSAQIHIRIDKPHSLWIEKAKSLPEKHLLNTKRKWGANKPHHRIKIW--VFQLST---- 729
            |..|::..:..|..:.  |.:  |.|.|.|..|..:..|...|....|...:|  ||..|:    
 Frog    54 SYMLNLYQSFHHSELS--HGM--EAAPSPPSNHRSDIIRSLAAKSFDHGGSLWTLVFDFSSLSQD 114

  Fly   730 ------SINITEKGIDKAIIFRASFQVD--------PKN------LG-------------WQKFD 761
                  .:....:..|.||:......||        .||      :|             |...:
 Frog   115 EEHQFAEVRFDFRVFDGAIVAGMEVMVDFFHQSSTCQKNSQSYLYVGSITGTLRSRSSETWVMLE 179

  Fly   762 LTDTIREWY-----GHTSHE----KLRLLIDCTGCGGRYS--------------LHLFQTSKLRG 803
            .||.|.:|:     |..:.|    :|..|........||.              .::.:..:|.|
 Frog   180 ATDIIHKWFEKDEKGKNNSEAHVKQLEKLARAKSAERRYQQQNTEDRQILMMVYSNISKKERLSG 244

  Fly   804 NS--------SDYLSTNPNRPFLVLHTESSRTRRVRR----------RAVDCGGALNGQCCKESF 850
            .:        |.||:..|....:      |.:||.||          :.|...|:....|.:..|
 Frog   245 TATLLQDAAHSKYLTVMPGIQTI------SNSRRHRRSHIFKEHMGMKHVPTAGSSRTLCRRVDF 303

  Fly   851 YVSFKALGWDDWIIAPRGYFANYCRGDCTGSFR---TPDTFQTFHAHFIEEYRKMGLMN----GM 908
            :|.||.:|||.|||.|:.|.|..|.|:|.....   .|:.    ||:.      ..|:|    |.
 Frog   304 FVDFKQIGWDSWIIHPQKYNAYRCEGECPSPVNESVKPNN----HAYM------QSLLNYYAKGK 358

  Fly   909 RP--CCAPIKFSSMSLIYYGDDGIIKRDLPKMVVDECGC 945
            .|  ||.||:.||:|::||..|.|..::...|:|:||||
 Frog   359 APEVCCVPIRMSSLSMVYYDHDDIAFQNHEGMIVEECGC 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActbetaNP_651942.2 TGF_beta_INHB 845..945 CDD:381630 39/108 (36%)
nodalXP_002936396.2 TGF_beta_NODAL 296..398 CDD:381637 41/112 (37%)

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