DRSC/TRiP Functional Genomics Resources

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Protein Alignment Actbeta and gdf9

DIOPT Version :9

Sequence 1:NP_651942.2 Gene:Actbeta / 43826 FlyBaseID:FBgn0024913 Length:946 Species:Drosophila melanogaster
Sequence 2:XP_002935305.1 Gene:gdf9 / 100496740 XenbaseID:XB-GENE-478149 Length:421 Species:Xenopus tropicalis


Alignment Length:452 Identity:83/452 - (18%)
Similarity:150/452 - (33%) Gaps:146/452 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   582 EYFNDYSV------QTHDKNRYHEGRS-----SIGYQPAIHNIEYENQKGHHESFADDHENIDHE 635
            ||..|||:      :..::.::.:...     :|.|...::.:     ....|.|...|:|..: 
 Frog    27 EYSEDYSLLPPLFKELSERPKWSDNAPGPNMVAIKYMKRLYKM-----SATKEGFPRLHKNPVY- 85

  Fly   636 DFFGNTQEIITFAEEGTQYRQYRILEFSAQNRRVPSQKLSIRSAQIHIRIDKPHSLWIEKAKSLP 700
                ||..:.|   ..|:.:..|..|.:.          .::|..:...:|:     :...:.|.
 Frog    86 ----NTVRLFT---PRTECKPEREREING----------GMQSLDLTFSVDR-----VSAVEQLL 128

  Fly   701 EKHLLN--TKRKWGANKPHHRIKIWVFQLSTSINITEKGIDKAIIFRA----SFQVDPKNLGWQK 759
            :..||.  :||...:|          ...:.|:.|....:...:..||    .||: .|...|.:
 Frog   129 QSLLLYSVSKRFSSSN----------ITCTCSLEILGYELQSTVCPRAPQSFHFQL-RKRQRWVE 182

  Fly   760 FDLTDTIREWYGHTSHEKLRLLIDCTGCGGRYSLHL-FQTSKLRGNSS-DYLSTNP-----NRPF 817
            .|:|..::.:..:.                |.::|| ...:.::.|.. |:.:|.|     :.|.
 Frog   183 IDVTSILQPFISNK----------------RQNIHLGLNFTCMKNNKHYDFATTGPFKMTRSPPS 231

  Fly   818 LVLHTESSRTRRVRRRAV--------------------DCGGAL--------------------- 841
            |:|:...:..:...||.:                    |..|.|                     
 Frog   232 LLLYLNDTSNKAYHRRIMHDIAEQPLYYPVGRIPSILADDEGNLKLQQMSRRRRNHDYEAILEEN 296

  Fly   842 --------------------NGQCCKESFYVSFKALGWDDWIIAPRGYFANYCRGDCTG--SFRT 884
                                :.:|....|.:||..|.||.||:||..|..:||:|.|..  ..|.
 Frog   297 TTVVPHTFNFSEYLKQFVYSHNECELHRFRLSFSQLNWDKWILAPHRYSPDYCKGVCPRIVGHRY 361

  Fly   885 PDTFQTFHAHFIEEYRKMGLMNGMRPCCAPIKFSSMS-LIYYGDDGIIKRDLPKMVVDECGC 945
            .....|...:.|  |.|:. .:..||.|.|.::..|| |....|:.|..::...|:..:|.|
 Frog   362 GSPVHTIVQNII--YEKVD-SSIPRPSCVPSEYRPMSVLTIEPDNSIAYKEYQDMIATKCTC 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActbetaNP_651942.2 TGFb_propeptide 370..>509 CDD:279078
TGF_beta 843..945 CDD:278448 32/104 (31%)
gdf9XP_002935305.1 TGF_beta_GDF9 318..421 CDD:381673 33/106 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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