DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Actbeta and lefty1

DIOPT Version :10

Sequence 1:NP_651942.2 Gene:Actbeta / 43826 FlyBaseID:FBgn0024913 Length:946 Species:Drosophila melanogaster
Sequence 2:NP_001123725.1 Gene:lefty1 / 100170470 XenbaseID:XB-GENE-6258963 Length:365 Species:Xenopus tropicalis


Alignment Length:432 Identity:96/432 - (22%)
Similarity:166/432 - (38%) Gaps:110/432 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   526 SPKELKSGAVRKVNGINGTQMNENALKKSTYPIDINHSIDNKTHTGKNGEMSHNDYEYFNDYSVQ 590
            ||..::...:||:|.....::.:..::|...|..|.....:..||                    
 Frog    24 SPDHIRDALLRKLNLQEPPKLEKRDVEKLLIPRHIQAKYMSMLHT-------------------- 68

  Fly   591 THDKNRYHEGRSSIGYQPAIHNIEYENQKGHHESFADDHENIDHEDFFGNTQEIITFAEEGTQYR 655
                :|..:.||    .|::..| .....|:    ||....|.:.|   ::::.:.|..|.    
 Frog    69 ----HRERKRRS----LPSLAGI-LRGISGN----ADIAGEIVYSD---SSKQTLVFGMES---- 113

  Fly   656 QYRILEFSAQNRRVPSQKLSIRSAQIHIRIDKPHSLWIEKAKSLPEKHLLNTKRKWGANKPHHRI 720
                        |:| :...:..|::.: ..||..:     .::||:..         ::|.:..
 Frog   114 ------------RIP-ENSEVTMAELKL-FKKPPQI-----MNVPERRF---------HRPVNNA 150

  Fly   721 KIWVF---QLSTSINITEKGIDKAIIFRASFQVDPKNLGWQKFDLTDTIREW--YGHTSHEKLRL 780
            ::.|:   .|:...|.|.. :|..:       |.....||:.||:|..::.|  .|..|...|.:
 Frog   151 RVSVYYVEMLTDGTNRTSL-VDSRL-------VPIMESGWRSFDVTQAVQYWTRSGGQSPMHLEI 207

  Fly   781 LIDCTGCGGRYSLHLFQTSKLRGNSSDYLSTNP-NRPFLVLHTESSRTRRVRRRAVDCGGALNGQ 844
            .:|    |.|:..|..:.:||...::...|.|. .:|.|||:|.:......|......|...:..
 Frog   208 RVD----GERHGSHASEMAKLVRFTTQSASDNSLGKPELVLYTLNLDEHGARGDCSASGAQKDHI 268

  Fly   845 CCKESFYVSFKALGWDD-WIIAPRGYFANYCRGDCTGSFRTPDTFQTFHAHFIEEYRKMGLMNGM 908
            ||:|..:::|:.|.|.. |||.|.||.|.:|.|.|    :.| .|...|.|:           |.
 Frog   269 CCREEHFINFRELTWTQYWIIEPAGYNAFHCTGSC----KQP-KFPLSHYHY-----------GQ 317

  Fly   909 RPCC----APIKFSSMSLIYYGDDGIIK-RDLPKMVVDECGC 945
            |.|.    ||:..  |.|:..||...|: .:.|.|:|::|||
 Frog   318 RTCAVVESAPLPV--MYLVKKGDYTEIEVAEFPNMIVEKCGC 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActbetaNP_651942.2 TGF_beta_INHB 845..945 CDD:381630 34/105 (32%)
lefty1NP_001123725.1 TGFb_propeptide <113..200 CDD:480997 21/126 (17%)
TGF_beta_LEFTY1_2 269..357 CDD:381636 34/105 (32%)

Return to query results.
Submit another query.