DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Actbeta and bmp6

DIOPT Version :9

Sequence 1:NP_651942.2 Gene:Actbeta / 43826 FlyBaseID:FBgn0024913 Length:946 Species:Drosophila melanogaster
Sequence 2:NP_001106378.1 Gene:bmp6 / 100127176 XenbaseID:XB-GENE-479134 Length:441 Species:Xenopus tropicalis


Alignment Length:515 Identity:112/515 - (21%)
Similarity:195/515 - (37%) Gaps:160/515 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   490 IDKKNSFLNGWTENRQLKINSQIASMPIELKSHH-NSSPKELKS-----GAVRKVNGINGTQMNE 548
            :||::|..:|:...|              ||||. ....||:.|     ...|.::|::.:|:|:
 Frog    27 VDKRSSMDSGFLYRR--------------LKSHEKREMQKEILSILGLPHRPRPIHGLSPSQLNQ 77

  Fly   549 NALKKST--YPIDINHSIDNKTHTGKNGEMSHNDYEYFNDYSVQTHDKNRYHEGRSSIGYQPAIH 611
            .....|.  :.:|:.:::     :|::..|...|:.:          :...|.           |
 Frog    78 PGKLNSAPLFMLDLYNAM-----SGQDQGMDLKDWSH----------RATLHS-----------H 116

  Fly   612 NIEYENQKGHHESFADDHENIDHEDFFGNTQEIITFA-----EEGTQYRQYRILEFSAQNRRVPS 671
            .::.::..|.|...|.|      ..|..:...:::|.     ::....|.:...|:.....::|.
 Frog   117 QLKVKSLLGSHLGSAQD------SAFLSDADMVMSFVNLVEHDKDLSPRLWHHKEYKFNLSQIPE 175

  Fly   672 QKLSIRSAQIHIRID------KPHSLWIEKAKSLPEKH-------LLNTKRKWGANKPHHRIKIW 723
            .: ::.:|:..|..|      :..:..|...:.|.|..       ||:|:..|.:::        
 Frog   176 GE-AVTAAEFRIYKDCVLGSFENQTFLISIYQVLAEHRNRETNIFLLDTQTVWASDE-------- 231

  Fly   724 VFQLSTSINITEKGIDKAIIFRASFQVDPKNLGWQKFDLTDTIREWYGHTSHE-KLRLLID---- 783
                                            ||.:||:|.|...|..:..|. .|:|.::    
 Frog   232 --------------------------------GWLEFDITATSNLWVMNPRHNFGLQLRVETRDG 264

  Fly   784 ------CTGCGGR--------YSLHLFQTSKL-----RGNSSDYLSTNPNRPFLVLHTESSRTRR 829
                  ..|..||        :.:..|:.|::     |..:|...:.|.||     :|::....|
 Frog   265 RNINAKAAGLVGRDGPYDKQPFMVAFFKASEVHLRTTRSATSKRKNQNRNR-----YTQAQDVSR 324

  Fly   830 VRRRAVDCGGALNGQCCKESFYVSFKALGWDDWIIAPRGYFANYCRGDCTGSFRTPDTFQTFHAH 894
            |..........|...|.|...||||:.|||.||||||:||.||||.|:|  ||       ..:||
 Frog   325 VSSITDYNSSELKTACRKHELYVSFQDLGWQDWIIAPKGYAANYCGGEC--SF-------PLNAH 380

  Fly   895 FIEEYRK-----MGLMNG---MRPCCAPIKFSSMSLIYYGDD-GIIKRDLPKMVVDECGC 945
            .......     :.|||.   .:|||||.|.:::|::|:.|: .:|.:....|||..|||
 Frog   381 MNATNHAIVQTLVHLMNPEYVPKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACGC 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ActbetaNP_651942.2 TGFb_propeptide 370..>509 CDD:279078 5/18 (28%)
TGF_beta 843..945 CDD:278448 44/110 (40%)
bmp6NP_001106378.1 TGFb_propeptide 32..290 CDD:366248 53/344 (15%)
TGF_beta_BMP6 339..441 CDD:381666 46/111 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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