DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sv and crx

DIOPT Version :10

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_694419.1 Gene:crx / 81881 ZFINID:ZDB-GENE-010403-1 Length:281 Species:Danio rerio


Alignment Length:172 Identity:46/172 - (26%)
Similarity:68/172 - (39%) Gaps:47/172 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   692 NRRSNLNASTHPSSLIPLQPSGGSSLLNINPSENRSDVELNLSNNVGLYS------TPTVLPSFN 750
            |||:........:|..| :|         .|.:.:|....:|:::.|..|      ||||.||  
Zfish    88 NRRAKCRQQQQQTSGQP-KP---------RPPKKKSSPPPDLTSDPGTSSSVVAAPTPTVPPS-- 140

  Fly   751 HYSAGCSSV----------VP------GSDYAYNPAYTQYGGAYG---SYGYGTGSGLINSSYYY 796
             .|||.:.|          :|      |:.....||  .|..:||   ||..|.||    |.|: 
Zfish   141 -VSAGTAPVSVWSPTSLSPLPDPLCGSGTPCVQRPA--PYPMSYGQPSSYSQGYGS----SPYF- 197

  Fly   797 ESGQTQSPLTHDLRSPLVATRANSLASAASPGSGSACTKSES 838
             ||...||....:.:.|.|: ..:|:....|..|.:.::|.|
Zfish   198 -SGLDCSPYLSPMTTQLSAS-GGALSPLTVPSMGGSLSQSPS 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645
crxNP_694419.1 homeodomain 38..97 3/8 (38%)
Homeodomain 49..94 CDD:459649 3/5 (60%)
TF_Otx 152..230 CDD:427350 22/86 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.