DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sv and Crx

DIOPT Version :10

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_068627.2 Gene:Crx / 60446 RGDID:620511 Length:299 Species:Rattus norvegicus


Alignment Length:228 Identity:42/228 - (18%)
Similarity:84/228 - (36%) Gaps:58/228 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   431 NTESSCKRKRIEAHDENHDTNIHSDNDDGKRQRMSTYSGDQLYTNIWSGKWCIKDDH--KLLAEL 493
            |..:.|:::|.:...:.....:.:.....||:   ..:..:..|::.:....|.|.:  .|....
  Rat    89 NRRAKCRQQRQQQKQQQQPPGVQAKARPAKRK---AGTSPRPSTDVCTDPLGISDSYSPSLPGPS 150

  Fly   494 GNLTASTGN----CPATYYEASNGFSTTPI---SGSGATASGNDT-----SMLYDSITTISQTQS 546
            |:.|.:...    .||         |.:|:   ..:|..|||:..     :|.|...:....:.|
  Rat   151 GSPTTAVATVSIWSPA---------SESPLPEAQRAGLVASGSSLTSAPYAMTYAPASAFCSSPS 206

  Fly   547 SIYTPAIGPSIGTG---SLTPLVPISMHEMKLSANSIQEQTVPPFYTALAFDGNYTSMTSLENCS 608
            :..:|:   |..:|   .|:|:||      :|...::...:.|....:||           ::.:
  Rat   207 AYASPS---SYFSGLDPYLSPMVP------QLGGPALSPLSGPSVGPSLA-----------QSPT 251

  Fly   609 SLVGQEHIVMPESSDSNTLCPISTRIVPDITET 641
            ||.||.:         :|..|:.:....|.|.|
  Rat   252 SLSGQSY---------STYSPVDSLEFKDPTGT 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645
CrxNP_068627.2 Homeodomain 40..93 CDD:459649 1/3 (33%)
TF_Otx 164..249 CDD:427350 22/113 (19%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.