DRSC/TRiP Functional Genomics Resources

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Protein Alignment sv and PAX4

DIOPT Version :10

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_001353039.1 Gene:PAX4 / 5078 HGNCID:8618 Length:351 Species:Homo sapiens


Alignment Length:126 Identity:81/126 - (64%)
Similarity:98/126 - (77%) Gaps:0/126 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   174 DGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYYETGSFK 238
            ||...:|||||:||||||||...||:||.||.:|:|||||||.|:||:|||||||.|||.||..:
Human     4 DGISSMNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 68

  Fly   239 AGVIGGSKPKVATPPVVDAIANYKRENPTMFAWEIRDRLLAEAICSQDNVPSVSSINRIVR 299
            ...||||||::||||||..||..|.|.|.:|||||:.:|.||.:|:||..||||||||::|
Human    69 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLR 129

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645 79/123 (64%)
PAX4NP_001353039.1 PAX 5..129 CDD:128645 79/123 (64%)
Homeodomain 172..227 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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