Protein Alignment sv and Nobox

DIOPT Version :10

• Sequence 1: NP_524633.3
• Gene: sv / 43825
• FlyBaseID: FBgn0005561
• Length: 844
• Species: Drosophila melanogaster
• Sequence 2: NP_001178942.1
• Gene: Nobox / 502759
• RGDID: 1563929
• Length: 524
• Species: Rattus norvegicus
• Alignment Length: 348
• Identity: 68/348 - (19%)
• Similarity: 115/348 - (33%)
• Gaps: 96/348 - (27%)

  Fly   513 GFSTTPISGSGATASGNDTSMLYDSI-------------TTISQTQSSIYTPAIGPSIGTGSLTP 564
            |....|:|.:.......||..::.:.             :::.:.::....|::  |.|.|.:..
  Rat    52 GLGKRPLSKTSGDCIDADTCRVHTAPSPAVCSPKPQKKGSSLQEKKAETVKPSM--SAGPGQVPN 114

  Fly   565 LVPISMHEMKLSANSIQEQTVPPFYTALAFDGNYTSM---TSLENCSSLVGQEHIVMPESSDSNT 626
              |::..|..|...        |......|.....::   ..||....:..::|  .|:|...:.
  Rat   115 --PLNFRERDLKKE--------PLEATCQFRKKTRTLYRSDQLEELERIFQEDH--YPDSDKRHE 167

  Fly   627 LCPISTRIVPD--ITETNSTRVKEPLTNSDGCSEDNN-KEPEKSNSSQSSDHIASPHLHHIGEEQ 688
            :..: ..:.|.  :....:.|.|..........|||| ..|.::||||..   ::|        :
  Rat   168 IAQM-VGVTPQRIMVWFQNRRAKWRKVEKLNEKEDNNGPAPPRANSSQCR---SAP--------E 220

  Fly   689 LRGNRRSNLNASTHPSSLI-------PLQPSGGSSLLNINPSENRSDVEL-------------NL 733
            |.|...::|.....|...|       |:..:...:|.:...:|:...|.:             ||
  Rat   221 LLGPMPTDLEPGPVPPENILDGFTEPPVLLTSDQTLTSSQHNESAERVAVTPPLLSPPPIRRTNL 285

  Fly   734 SNNVGLYSTPTVLPSFNHYSAGCSSVVPGSDYAY--NPAYTQYGGAYGSYGYGTGSGLINSSY-- 794
            ...:|.:..|.|||....        |||||..|  .|.        ||:|....|..|.|:.
  Rat   286 PLPLGPFQAPQVLPPLRD--------VPGSDSIYKDKPC--------GSWGTSITSPPIYSNLED 334

  Fly   795 -----YYESGQ------TQSPLT 806
                 |..|.|      ||:|.|
  Rat   335 MGPQDYQASNQLGSFQLTQAPQT 357

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sv	NP_524633.3	PAX	175..299	CDD:128645
Nobox	NP_001178942.1	Homeodomain	136..192	CDD:459649	8/58 (14%)