DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sv and Pax7

DIOPT Version :9

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:XP_006239325.1 Gene:Pax7 / 500574 RGDID:1564360 Length:505 Species:Rattus norvegicus


Alignment Length:643 Identity:165/643 - (25%)
Similarity:237/643 - (36%) Gaps:252/643 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYYETGSFKA 239
            |.|.||||||||:||||||:.:|.:|||:||:|:|||.||||||||||||||||.||.||||.:.
  Rat    34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRP 98

  Fly   240 GVIGGSKPK-VATPPVVDAIANYKRENPTMFAWEIRDRLLAEAICSQDNVPS--VSSINRIVRNK 301
            |.||||||: ||||.|...|..||||||.||:||||||||.:..|.:..|||  ||||:|::|.|
  Rat    99 GAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSISRVLRIK 163

  Fly   302 AAEKAKHVHHHQQHHVSQSLGGGHIATESVDSSTGTIGEPQPPTSNSSANSVNTNVSASASVHAS 366
            ..:|.                         |...|...|..                        
  Rat   164 FGKKE-------------------------DDEEGDKKEED------------------------ 179

  Fly   367 IPTSGTDSVQVSVGHINANSNETTHINSTAEQRTTGYSINGILGIQHGHHSHNNNNNSSVNNNNN 431
                                          .::...:||:||||          :..:.::..::
  Rat   180 ------------------------------GEKKAKHSIDGILG----------DKGNRLDEGSD 204

  Fly   432 TESS----CKRKR---------------IEAHDENHDTNIHSDNDDGKRQRMSTYSGDQLYTNIW 477
            .||.    .|||:               .:|.:..|..:|::..:..:|.:::     :....:|
  Rat   205 VESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLT-----EARVQVW 264

  Fly   478 ----SGKWCIKDDHKLLAELGNLTASTGNCPATYYEASNGFSTTPISGSGATASGNDTSMLYDS- 537
                ..:|..:.....||...:|.  .|..|.|      |..|.|            ...|.|| 
  Rat   265 FSNRRARWRKQAGANQLAAFNHLL--PGGFPPT------GMPTLP------------PYQLPDSA 309

  Fly   538 --ITTISQT-QSSIYTPAIGPSIGTGSLTPLVPISMHEMKLSANSIQEQTVPPFYTALAFDGNYT 599
              .||:||. .|:::.|           .||.|.:||:..|:|            .|.|.|.   
  Rat   310 YPTTTVSQDGGSTVHRP-----------QPLPPSTMHQGGLAA------------AAAAADS--- 348

  Fly   600 SMTSLENCSSLVGQEH-------IVMPESSDSNTLCPISTRIVPDITETNSTRVKEPLTNSDGCS 657
                    ||..|..|       ..|...:.||.:.|:|..:.|.:                   
  Rat   349 --------SSAYGARHSFSSYSDSFMNPGAPSNHMNPVSNGLSPQV------------------- 386

  Fly   658 EDNNKEPEKSNSSQSSDHIASPHLHHIGEEQLRGNRRSNLNASTHPSSLIPLQPSGGSSLLNINP 722
                                                   ::..::||: :|.||....|:..::.
  Rat   387 ---------------------------------------MSILSNPSA-VPPQPQADFSISPLHG 411

  Fly   723 S-ENRSDVELNLSNNVGLYSTPTVLPSFNHYSAGCSSVVPGSDYAYNPA----YTQYG 775
            . ::.|.:..:.|...........||:...|   |......:.|:.:|.    |:|||
  Rat   412 GLDSASSISASCSQRADSIKPGDSLPTSQSY---CPPTYSTTGYSVDPVAGYQYSQYG 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645 86/126 (68%)
Pax7XP_006239325.1 PAX 34..161 CDD:128645 86/126 (68%)
Homeobox 220..274 CDD:395001 6/58 (10%)
Pax7 <354..385 CDD:403540 6/30 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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