DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sv and repo

DIOPT Version :9

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster


Alignment Length:608 Identity:118/608 - (19%)
Similarity:180/608 - (29%) Gaps:235/608 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 DSQHLQQHHLTHHQQQDVS-PTLHNLQNTRTGDSLSTTINTNQNQHGHQ-------H-LSGSNMY 104
            :.|..||||..|||....: |..||      |..|....:..|.|...|       | |:|...|
  Fly   114 EQQQQQQHHHQHHQHYTATPPPSHN------GILLHKQSSQQQQQQQQQLVGILDYHPLNGKLDY 172

  Fly   105 TSSQMEDKSKANKYDEYSSRTLSNISDANTTPSANNFITQSQGIEWITAMNDIQNGAED--SHSS 167
            :||..         |:|..:.|.::...:.                 ..::.:.:|::.  ..||
  Fly   173 SSSPK---------DQYEPQQLQHLYGGSP-----------------HHLDHLDHGSDGLLQDSS 211

  Fly   168 QGSISGDGHGG--------VNQL--GGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVS-H 221
            ...|:|...||        .:||  ||..|.    |......:|....||....:.|....|. .
  Fly   212 PVMINGGSAGGKLKKPDEMCSQLEAGGAGVT----PPSSSSTVVNGTTNGTGNANSSSSAGVGIQ 272

  Fly   222 GCVSKILSRYYETGSFKAGVIGGSKPKVATPPV-VDAIANYKRENP----------TMFAWEIR- 274
            |.               ||..||    ||.|.. .|..::.|:.:|          |..|:::. 
  Fly   273 GA---------------AGTAGG----VAAPAAKKDGSSSKKKGDPNGIKKKKTRTTFTAYQLEE 318

  Fly   275 -----------DRLLAEAICSQDNVPSVSSINRIVRNKAAEKAKHVHHHQQHHVSQSLGGGHIAT 328
                       |....|.:..:.|: |.|.:....:|:.|:..||....:.         |:|.|
  Fly   319 LERAFERAPYPDVFAREELAIKLNL-SESRVQVWFQNRRAKWRKHEPPRKT---------GYIKT 373

  Fly   329 ESVDSST---GTIGEP----------QPPTSNSSANSVNTN---------VSASAS--------- 362
            .:..::|   ||:..|          .||.|..|..|..|.         :|.:||         
  Fly   374 STPPTATLNPGTLAPPFTSYPQTTTVTPPGSMDSWTSYQTPYELTPQFSLLSPAASPYGTYSGQY 438

  Fly   363 ---VH------------------------ASIPTSGTDSVQVSVGHINANSNETTHINSTAEQRT 400
               ||                        .|:..:|.:||      .|..|.:|..:.:..:|:.
  Fly   439 GAYVHESQLFPMRHYEYGSPTRMEMGATTGSVAGNGDESV------ANGGSYQTAELQTAQQQQL 497

  Fly   401 TGYSINGILGIQHGHHSHNNNNNSSVNNNNNTESSCKRKRIEAHDENHDTNIHSDNDDGKRQRMS 465
            .    :|.|...|. |.........:|....:....|...::.|.                    
  Fly   498 A----DGTLVTVHA-HQQQQQQQQQLNGKYLSAEEAKYVHLQCHQ-------------------- 537

  Fly   466 TYSGDQLYTNIWSGKWCIKDDHKLLAELGNLTASTG-NCPATYYEASNGFSTTPISGSGATASG- 528
                        ||              |.|..|.| :|...  ||......|..:|..|:|.| 
  Fly   538 ------------SG--------------GGLELSPGASCHLV--EAQGQHYVTTATGGAASAGGT 574

  Fly   529 ----NDTSMLYDSITT--ISQTQ 545
                ||:..:...|.:  :||.|
  Fly   575 SSDDNDSGGMQTVIKSEEVSQQQ 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645 31/157 (20%)
repoNP_477026.1 Homeobox 313..360 CDD:278475 8/47 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451027
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.930

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