Protein Alignment sv and repo

DIOPT Version :10

• Sequence 1: NP_524633.3
• Gene: sv / 43825
• FlyBaseID: FBgn0005561
• Length: 844
• Species: Drosophila melanogaster
• Sequence 2: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Alignment Length: 608
• Identity: 118/608 - (19%)
• Similarity: 180/608 - (29%)
• Gaps: 235/608 - (38%)

  Fly    49 DSQHLQQHHLTHHQQQDVS-PTLHNLQNTRTGDSLSTTINTNQNQHGHQ-------H-LSGSNMY 104
            :.|..||||..|||....: |..||      |..|....:..|.|...|       | |:|...|
  Fly   114 EQQQQQQHHHQHHQHYTATPPPSHN------GILLHKQSSQQQQQQQQQLVGILDYHPLNGKLDY 172

  Fly   105 TSSQMEDKSKANKYDEYSSRTLSNISDANTTPSANNFITQSQGIEWITAMNDIQNGAED--SHSS 167
            :||..         |:|..:.|.::...:.                 ..::.:.:|::.  ..||
  Fly   173 SSSPK---------DQYEPQQLQHLYGGSP-----------------HHLDHLDHGSDGLLQDSS 211

  Fly   168 QGSISGDGHGG--------VNQL--GGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVS-H 221
            ...|:|...||        .:||  ||..|.    |......:|....||....:.|....|. .
  Fly   212 PVMINGGSAGGKLKKPDEMCSQLEAGGAGVT----PPSSSSTVVNGTTNGTGNANSSSSAGVGIQ 272

  Fly   222 GCVSKILSRYYETGSFKAGVIGGSKPKVATPPV-VDAIANYKRENP----------TMFAWEIR- 274
            |.               ||..||    ||.|.. .|..::.|:.:|          |..|:::.
  Fly   273 GA---------------AGTAGG----VAAPAAKKDGSSSKKKGDPNGIKKKKTRTTFTAYQLEE 318

  Fly   275 -----------DRLLAEAICSQDNVPSVSSINRIVRNKAAEKAKHVHHHQQHHVSQSLGGGHIAT 328
                       |....|.:..:.|: |.|.:....:|:.|:..||....:.         |:|.|
  Fly   319 LERAFERAPYPDVFAREELAIKLNL-SESRVQVWFQNRRAKWRKHEPPRKT---------GYIKT 373

  Fly   329 ESVDSST---GTIGEP----------QPPTSNSSANSVNTN---------VSASAS--------- 362
            .:..::|   ||:..|          .||.|..|..|..|.         :|.:||
  Fly   374 STPPTATLNPGTLAPPFTSYPQTTTVTPPGSMDSWTSYQTPYELTPQFSLLSPAASPYGTYSGQY 438

  Fly   363 ---VH------------------------ASIPTSGTDSVQVSVGHINANSNETTHINSTAEQRT 400
               ||                        .|:..:|.:||      .|..|.:|..:.:..:|:.
  Fly   439 GAYVHESQLFPMRHYEYGSPTRMEMGATTGSVAGNGDESV------ANGGSYQTAELQTAQQQQL 497

  Fly   401 TGYSINGILGIQHGHHSHNNNNNSSVNNNNNTESSCKRKRIEAHDENHDTNIHSDNDDGKRQRMS 465
            .    :|.|...|. |.........:|....:....|...::.|.
  Fly   498 A----DGTLVTVHA-HQQQQQQQQQLNGKYLSAEEAKYVHLQCHQ-------------------- 537

  Fly   466 TYSGDQLYTNIWSGKWCIKDDHKLLAELGNLTASTG-NCPATYYEASNGFSTTPISGSGATASG- 528
                        ||              |.|..|.| :|...  ||......|..:|..|:|.|
  Fly   538 ------------SG--------------GGLELSPGASCHLV--EAQGQHYVTTATGGAASAGGT 574

  Fly   529 ----NDTSMLYDSITT--ISQTQ 545
                ||:..:...|.:  :||.|
  Fly   575 SSDDNDSGGMQTVIKSEEVSQQQ 597

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sv	NP_524633.3	PAX	175..299	CDD:128645	31/157 (20%)
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	8/48 (17%)