DRSC/TRiP Functional Genomics Resources

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Protein Alignment sv and ey

DIOPT Version :10

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster


Alignment Length:824 Identity:234/824 - (28%)
Similarity:320/824 - (38%) Gaps:276/824 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYYETGSFKAG 240
            |.||||||||||.||||||..||:||||||:|.|||||||.|:||:|||||||.|||||||.:..
  Fly    98 HSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPR 162

  Fly   241 VIGGSKPKVATPPVVDAIANYKRENPTMFAWEIRDRLLAEAICSQDNVPSVSSINRIVRNKAAEK 305
            .||||||:|||..||..|:.||||.|::||||||||||.|.:|:.||:||||||||::||.||:|
  Fly   163 AIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRNLAAQK 227

  Fly   306 AKHVHHHQQH----------------HVSQSLGG--GHIATES---VDSSTGTIGEPQPPTSNSS 349
                  .||.                .||.|:||  .::|:.|   :.|||..:....|..|:.|
  Fly   228 ------EQQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSES 286

  Fly   350 ANSVNT----------------NVSASASVHASIPTSGTDSVQVSVGHINANSN--ETTHINSTA 396
            ..:.|:                |...:|......|......|..|..|:...|:  :..|.|..|
  Fly   287 GGASNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLVHGNHQA 351

  Fly   397 EQR---------------------------------TTGYS--------------INGILGIQH- 413
            .|:                                 .|.|:              |..:..|.| 
  Fly   352 LQQHQQQSWPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQ 416

  Fly   414 -----------------GHHS------HNNNNNSSVNNNNNTESSCKRKRIEAHDENHDTNIHSD 455
                             ||.|      ...|:|...:|..|||....|..::...:.:.|:..:|
  Fly   417 RNCPVATEDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTND 481

  Fly   456 NDDG--------------KRQRMSTYSG-DQLYTNIW----SGKWCIKDDHKLLAELGNLTASTG 501
            ..|.              .|:|::...| .:....:|    ..||  :.:.||            
  Fly   482 QIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKW--RREEKL------------ 532

  Fly   502 NCPATYYEASNGFSTTPISGSGATASGND-TSMLYDSITTISQTQSSIYTPAIGPSIGT--GSLT 563
                     .|...|...:|:.||:|... |:.|.||..::|...|.:...|.|||:.|  |..:
  Fly   533 ---------RNQRRTPNSTGASATSSSTSATASLTDSPNSLSACSSLLSGSAGGPSVSTINGLSS 588

  Fly   564 PLVPISMHEMKLSANSIQEQTVPPFYTALAFDGNYTSMTSLENCSSLVGQEHIVMPESSDSNTLC 628
            |        ..||.|    ...|.....:                           :||:|.|..
  Fly   589 P--------STLSTN----VNAPTLGAGI---------------------------DSSESPTPI 614

  Fly   629 PISTRIVPDITETNSTRVKEPLTNSDGCSEDNNKEPEKSNSSQSSD--HIASPHLHHIGEEQLRG 691
            |   .|.|                  .|:.||:      |..||.|  .:.||....:|..|...
  Fly   615 P---HIRP------------------SCTSDND------NGRQSEDCRRVCSPCPLGVGGHQNTH 652

  Fly   692 NRRSNLNASTHPSSLIP-LQPSGGSSLLNINPS------ENRSDVELNLSNNVGLYSTPTVLPSF 749
            :.:||.:|..|  :|:| :.|.     ||.|..      .|.....|::|::   |...|.:|||
  Fly   653 HIQSNGHAQGH--ALVPAISPR-----LNFNSGSFGAMYSNMHHTALSMSDS---YGAVTPIPSF 707

  Fly   750 NHYSAG----------CSSVVPGSDYAYN---------PAYTQY----GGAYGSYGYGTG-SGLI 790
            ||.:.|          ...:.|.|.|..:         ||:...    ||.....|.|:| |..:
  Fly   708 NHSAVGPLAPPSPIPQQGDLTPSSLYPCHMTLRPPPMAPAHHHIVPGDGGRPAGVGLGSGQSANL 772

  Fly   791 NSSYYYESGQTQSPLT-HDLRSPLVA--TRANSLASAASPGSGS 831
            .:|.   ||.....|: :.|..|.:|  :.|:|..||||..|.:
  Fly   773 GASC---SGSGYEVLSAYALPPPPMASSSAADSSFSAASSASAN 813

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645 89/122 (73%)
eyNP_001014693.1 PAX 98..221 CDD:128645 89/122 (73%)
Homeodomain 473..528 CDD:459649 9/56 (16%)

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