DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sv and toe

DIOPT Version :9

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster


Alignment Length:617 Identity:148/617 - (23%)
Similarity:218/617 - (35%) Gaps:231/617 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 LGGVFVNGRPL--PDVV------------RQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYY 232
            |||:|..|...  |...            :.|::||:..|:|..|:::.:....|.|||:|    
  Fly   104 LGGIFCGGSAAAGPGAAAAAATNLNALASQHRLLELSRFGLRGYDLAQHMLSQQGAVSKLL---- 164

  Fly   233 ETGSFK-AGVIGGSKPKVATPPVVDAIANYKRENPTMFAWEIRDRLLAEAICSQDNVPSVSSINR 296
              |:.: .|:|||||||||||.||..|..|||||||:||||||:||:.|.:|:....||||||||
  Fly   165 --GTLRPPGLIGGSKPKVATPTVVSKIEQYKRENPTIFAWEIRERLITEGVCTNATAPSVSSINR 227

  Fly   297 IVRNKAAEKA----------------KHVHHHQQ------HHVSQSLGGGHIATESVDSSTGTIG 339
            |:||:|||:|                .|.|.:..      ||  ...|...:||.......|..|
  Fly   228 ILRNRAAERAAAEFARAASYGYAIHPTHPHPYTSFPTWPAHH--PLWGAVPLATPPGGGPAGAGG 290

  Fly   340 EPQPPTSNSSANSVNTNVSASASVHASIPTSGTDSVQVSVGHINANSNETTHINSTAEQRTTGYS 404
            ..||..|.||..| :.|:|::.                     |::::.|||.|           
  Fly   291 ALQPGGSGSSYGS-DGNMSSNP---------------------NSSNSNTTHSN----------- 322

  Fly   405 INGILGIQHGHHSHNNNNNSSVNNNN-----------NTESSCKRKRIEAHDENHDTNIH----- 453
                        .||.|:.|...:::           :.:|..:..|....|.|...:|.     
  Fly   323 ------------GHNTNSGSGCGDSSAGSGRLSLPALSPDSGSRDSRSPDADANRMIDIEGEDSE 375

  Fly   454 -SDNDDGK-RQRMSTYSGDQL-----------YTNIWSGKWCIKDDHKLLAELGNLTAST----G 501
             .|:|..| |:..:|:|.:||           |.       |:....||.|......|..    .
  Fly   376 SQDSDQPKFRRNRTTFSPEQLDELEKEFDKSHYP-------CVNTREKLAARTALSEARVQVWFS 433

  Fly   502 NCPATYYEASNGFSTTPISGSGATASGNDTSMLYDSITTISQ----TQSSIYTPAIGPSIGTGSL 562
            |..|.:..                         :..:..|.|    :.||..||.:.|.:     
  Fly   434 NRRAKWRR-------------------------HQRVNLIKQRDSPSTSSSPTPLVNPVV----- 468

  Fly   563 TPLVPISMHEMKLSANSIQEQTVPPFYTALAFDGNYTSMTSLENCSSLVGQEHIVMPESSDSNTL 627
            :|:.||.:             .||                             :.:|||......
  Fly   469 SPVSPIPV-------------PVP-----------------------------VAVPESGQQKQP 491

  Fly   628 CPISTRIVPDITETNSTRVKEPLTNSDGCSEDN--NKEPEKSNSSQSSDHIASPHLHHIGEEQLR 690
            .|.||        :|........:||..|:..|  :|...|::|..|:.|:..|           
  Fly   492 YPYST--------SNMCNTSSSSSNSQPCNTINPGSKMSSKTSSVSSNQHMEEP----------- 537

  Fly   691 GNRRSNLNASTHPSSLIPLQPSGGSSLLNINP 722
                :...|:..|::..||...|.:|.....|
  Fly   538 ----AAAVATASPTASAPLSMGGENSAFRALP 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645 59/131 (45%)
toeNP_524041.2 HTH 134..230 CDD:304362 53/101 (52%)
Homeobox 388..440 CDD:278475 12/58 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450833
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.840

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