DRSC/TRiP Functional Genomics Resources

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Protein Alignment sv and PHDP

DIOPT Version :10

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_523834.1 Gene:PHDP / 37788 FlyBaseID:FBgn0025334 Length:220 Species:Drosophila melanogaster


Alignment Length:145 Identity:32/145 - (22%)
Similarity:54/145 - (37%) Gaps:44/145 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   348 SSANSVNTNVSASASVHASIPTSGTDSVQVSV-GHINANSNETTHINSTAEQRTTGYSINGILGI 411
            |..|..|.:.....:.::....||.:...:|| .|||       |.|...:   :.|.:..    
  Fly     4 SLLNKANFDKDCLYTANSEFYNSGANGGGLSVANHIN-------HYNLMID---SSYKLCA---- 54

  Fly   412 QHGHHSHNNNNNSSVNNNNNTESSCKRKRIEAHDE-----------NHDTNIHSDNDDG------ 459
                      |.|::..:.|.|||....:|....|           |.|.::.|..|||      
  Fly    55 ----------NESAIRGSLNQESSLLFSKITTVSEFYPATHNIGSYNTDFHLKSYGDDGLSLTDK 109

  Fly   460 -KRQRM-STYSGDQL 472
             |::|: :|::.:||
  Fly   110 SKQRRIRTTFTSNQL 124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645
PHDPNP_523834.1 Homeodomain 113..169 CDD:459649 4/12 (33%)
Blue background indicates that the domain is not in the aligned region.

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