DRSC/TRiP Functional Genomics Resources

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Protein Alignment sv and Gsc2

DIOPT Version :10

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_001102316.1 Gene:Gsc2 / 363831 RGDID:1305333 Length:214 Species:Rattus norvegicus


Alignment Length:71 Identity:20/71 - (28%)
Similarity:30/71 - (42%) Gaps:11/71 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   263 RENPTMFAWEIRDRLLAEAICSQDNVPSVSSINRI-VRNKAAEKAKHV--------HHHQQHHVS 318
            |.:.|:|:.|....|  ||:..|:..|.|.:..|: ||.:..|:...|        ..||:...|
  Rat   137 RRHRTIFSEEQLQAL--EALFVQNQYPDVGTRERLAVRIRLREERVEVWFKNRRAKWRHQKRVSS 199

  Fly   319 QSLGGG 324
            ..|..|
  Rat   200 SRLAPG 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645 11/36 (31%)
Gsc2NP_001102316.1 Homeodomain 137..193 CDD:459649 15/57 (26%)

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