DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sv and CG32532

DIOPT Version :9

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_608318.5 Gene:CG32532 / 32943 FlyBaseID:FBgn0052532 Length:688 Species:Drosophila melanogaster


Alignment Length:612 Identity:116/612 - (18%)
Similarity:190/612 - (31%) Gaps:216/612 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   312 HQQHHVSQSLGGGHIATESVDSSTGTIGEPQPPTSNSSANSV------NTNVSASASVH------ 364
            |:.....||..||        ..:|..|.|.|.....::..|      |:|..|:|...      
  Fly    62 HKLDFKHQSCAGG--------PGSGGAGGPGPGGGGGASGVVVVGGTSNSNNPAAAQQQQQQQQQ 118

  Fly   365 ----------ASIPTSGTDS-VQVSVGHINANSNETTHINSTAEQRTTGYSINGILGIQHGHHSH 418
                      .:.|::|::| |.:|:.|.:|::   :|.:|:....:..::    |.|.||||..
  Fly   119 QQQQQQQQSGGNNPSNGSNSAVALSLAHPHAHA---SHAHSSHAHGSHAHA----LAIAHGHHGL 176

  Fly   419 NNNNNSSVNNNNNTESSCKRKRIEAHDENHDTNIHSDNDDGKRQRMSTYSGDQLYTNIWSGKWCI 483
            ..:...........:...::::.:|........:.|.....::|:.......|.           
  Fly   177 LPSVVPQQQQQQQQQQQQQQQQQQAQQLPPGVGVASPLQQQQQQQQQQQQQQQQ----------- 230

  Fly   484 KDDHKLLAELGNLTAST-----GNCPATYYEASNGFSTTPISGSGATASGNDTSMLYDSITTISQ 543
            :...:.|...|.::|.|     ||.|     :|:|..|..:|.:.|.|:         :....|.
  Fly   231 QQQQQQLINNGGVSAGTPTLLIGNGP-----SSSGAGTGSVSAAAAAAA---------AAAAASS 281

  Fly   544 TQSSIYTPAIGP-SIGTGSLTPLVPISMHEMKLSANSIQEQTVPPFYT-ALAF----DGNYTSMT 602
            :.||:  |.:.| |:|   |:|         :.||:|.|....|..:: .|.|    .|...||.
  Fly   282 SSSSL--PHVAPHSLG---LSP---------QSSADSQQFNIFPAIFSRQLNFSAGGQGGKLSMD 332

  Fly   603 SLENCSSLVG----------QEHIVMPE---------------------SSDSNTLCPISTRIVP 636
            .|.  .:|||          ::|..|..                     .|..|.|..:::    
  Fly   333 ELR--PNLVGGLLGLQQGLLEDHASMQHGGVGQDTKFMSFQDQRLMGIGGSHENRLLSLAS---- 391

  Fly   637 DITETNSTRVKEPLTNSDGCSEDNNKEPEKSNSS----------------QSSDHIASPHLHHIG 685
            .:.:|.|     |:|..:..|..:.....|.:|:                .||.|      ||  
  Fly   392 SVQDTRS-----PITTLEKSSSSSLNHQRKCSSTPEDFSALYSGLPTPGMDSSSH------HH-- 443

  Fly   686 EEQLRGNRRSNLNASTHPSSLIPLQPSGGSSLLNINPSENRSDVELNLSNNVGLYSTPTVLPSFN 750
                       ..|.|.||.|.....|...:...:.|..|.           ||.:.        
  Fly   444 -----------TPAHTPPSRLSDHTISAEGAFKKLKPEPNS-----------GLSTV-------- 478

  Fly   751 HYSAGCSSVVPGSDYAYNPAYTQYGGAYGSYGYGTGSGLINSSYYYESGQTQSPLTHDLRSPLVA 815
              |||.:|                          .||||  ||....:|.|  |.|....:|...
  Fly   479 --SAGITS--------------------------PGSGL--SSLSQHAGHT--PTTASCPTPARR 511

  Fly   816 TRANSLASAASPGSGSACTKSESSDIF 842
            ....:..........:|..||...||:
  Fly   512 RHRTTFTQEQLAELEAAFAKSHYPDIY 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645
CG32532NP_608318.5 Homeobox 513..566 CDD:278475 5/26 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450873
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.930

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