DRSC/TRiP Functional Genomics Resources

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Protein Alignment sv and unc-4

DIOPT Version :10

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_573242.2 Gene:unc-4 / 32757 FlyBaseID:FBgn0024184 Length:588 Species:Drosophila melanogaster


Alignment Length:247 Identity:54/247 - (21%)
Similarity:86/247 - (34%) Gaps:77/247 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   638 ITETNSTRVKEPLTNSDGCS----------EDNNKEPEK------SNSSQSSDHIASPHLHHIGE 686
            :.||:....|:.|||::..|          .:||..|::      .:||.||:.|.:.|..:.|:
  Fly     2 VLETSEGDTKKFLTNNNNSSASRNNNSHNNNNNNHSPKEIPEETGRSSSTSSNSIPNAHRTNAGQ 66

  Fly   687 EQLRGNRRSNLNAST----------HPSSLIPLQPSGGSSLLNINPSENRSDVELNLSNNVGL-- 739
            ..|.|:..|..:.|.          ||::.:.|.    ::...:.|            |.|.:  
  Fly    67 HLLGGSPSSACSTSVSGCGMPSEGLHPTAALQLY----AAAAQLAP------------NGVRVPP 115

  Fly   740 ------YSTPTVL---------PSFNHYSAGCSSVVPGSDYAYNPAYTQYGGAYGSYGYGTGSGL 789
                  :..|.|.         |.|:..|||..   |.| .|...|.||......|..:...:||
  Fly   116 WGPFLQFGVPGVFGPNGPFLGRPRFDAASAGGH---PNS-AAAAAAATQMAAVNASNAFANLTGL 176

  Fly   790 INSSYYYES----------GQTQSPLTHDLRSPLVATRANSLASAASPGSGS 831
            ..::....|          ..|.:.:.|.|   ::..| .||..|..|..||
  Fly   177 SAAALRNVSAAQTTAVAAVASTVATIQHRL---MIGNR-QSLPPAGPPSEGS 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645
unc-4NP_573242.2 Homeodomain 244..300 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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