Protein Alignment sv and oc

DIOPT Version :10

• Sequence 1: NP_524633.3
• Gene: sv / 43825
• FlyBaseID: FBgn0005561
• Length: 844
• Species: Drosophila melanogaster
• Sequence 2: NP_001356934.1
• Gene: oc / 31802
• FlyBaseID: FBgn0004102
• Length: 664
• Species: Drosophila melanogaster
• Alignment Length: 616
• Identity: 126/616 - (20%)
• Similarity: 207/616 - (33%)
• Gaps: 195/616 - (31%)

  Fly   275 DRLLAEAICSQDNVPSVSSINRIVRNKAAEKAKHVHHHQQHHVSQSLGGGHIATESVDSSTGTIG 339
            |..:.|.:..:.|:|. |.:....:|:.|:..:.:...||   |.||      :.|.::|.|..|
  Fly    93 DIFMREEVALKINLPE-SRVQVWFKNRRAKCRQQLQQQQQ---SNSL------SSSKNASGGGSG 147

  Fly   340 EPQPPTSNSSANS-VNTNVSASASVHASIPTSGTDSVQVSVGHINANSNETTHINSTAEQRTTGY 403
            .   ..|:||||| .|:|.:.|:|         .::.|.|.|: |:|.:.....||.:.|:..|.
  Fly   148 N---SCSSSSANSRSNSNNNGSSS---------NNNTQSSGGN-NSNKSSQKQGNSQSSQQGGGS 199

  Fly   404 SINGILGIQHGHHSHNNNNNSSVNNNNNTESSCKRKRIEAHDE--------------NHDTNIHS 454
            |           ..:|:||||:....:...:....:.|:.|..              |...|.:|
  Fly   200 S-----------GGNNSNNNSAAAAASAAAAVAAAQSIKTHHSSFLSAAAAAASGGTNQSANNNS 253

  Fly   455 DNDD-GKRQRMSTYSGDQLYTNIWSGKWCIKDDHKLLAELG---NLTASTGN------CPATYYE 509
            :|:: |.....|:.||        .|.......|...|...   |:||:..|      .|||
  Fly   254 NNNNQGNSTPNSSSSG--------GGGGSQAGGHLSAAAAAAALNVTAAHQNSSPLLPTPAT--- 307

  Fly   510 ASNGFSTTPIS---------------------GSGATASGNDTSMLYDSITTISQTQSSIYTPAI 553
                 |.:|:|                     |.||::.|.:..:                  .:
  Fly   308 -----SVSPVSIVCKKEHLSGGYGSSVGGGGGGGGASSGGLNLGV------------------GV 349

  Fly   554 GPSIGTGSLTPLVPISM------------------------HEMKLSANSIQEQTVPPFYTALAF 594
            |..:|.|     |.:|.                        |.:..||.....:.:.|
  Fly   350 GVGVGVG-----VGVSQDLLRSPYDQLKDAGGDIGAGVHHHHSIYGSAAGSNPRLLQP------- 402

  Fly   595 DGNYTSMTSLENCSSLVGQEHIVMPESSDSNTLCPISTRIVPDITETNSTRVKEPLTNSDGCSED 659
            .||.|.|   ::.||:......:.|.|..|......:.:.... ...::......::|.|..:..
  Fly   403 GGNITPM---DSSSSITTPSPPITPMSPQSAAAAAHAAQSAQS-AHHSAAHSAAYMSNHDSYNFW 463

  Fly   660 NNKEPEKSNSSQSSDHIASPHLHHIGEEQLR------GNRRSNLNASTHPS--SLIPLQPSGGSS 716
            :|:..:..|:...:....|...:...:.|:.      |...||...|..||  ..:..|....:|
  Fly   464 HNQYQQYPNNYAQAPSYYSQMEYFSNQNQVNYNMGHSGYTASNFGLSPSPSFTGTVSAQAFSQNS 528

  Fly   717 LLNINPSENRSDVELNL--------SNNVGLYSTPTVLPSFNHYSAGCSSVVPGSDYAYNPAYTQ 773
            |..::|.:..:::. ||        ||              |:.|||.|....||.       :.
  Fly   529 LDYMSPQDKYANMVXNLLFQYCSGGSN--------------NNSSAGASGSGSGSG-------SG 572

  Fly   774 YGGAYGSYGYGTGSGLINSSYYYESGQTQSP 804
            .|...|| |.|:|||..:.|   .||...||
  Fly   573 SGSGSGS-GCGSGSGSGSGS---GSGSNSSP 599

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sv	NP_524633.3	PAX	175..299	CDD:128645	5/23 (22%)
oc	NP_001356934.1	Homeodomain	68..123	CDD:459649	7/30 (23%)