Protein Alignment sv and Vsx1

DIOPT Version :10

• Sequence 1: NP_524633.3
• Gene: sv / 43825
• FlyBaseID: FBgn0005561
• Length: 844
• Species: Drosophila melanogaster
• Sequence 2: NP_572232.2
• Gene: Vsx1 / 31470
• FlyBaseID: FBgn0263511
• Length: 837
• Species: Drosophila melanogaster
• Alignment Length: 586
• Identity: 108/586 - (18%)
• Similarity: 180/586 - (30%)
• Gaps: 208/586 - (35%)

  Fly    11 HHIHGLGTHELQHRILHPHILHSTQEETLNTSTGQLEHDSQHLQQHHLTHHQQQDV--------S 67
            ||.|. ..|...|..:|.|..|:.                 |....| .||.:..:        :
  Fly   321 HHAHA-QAHAHAHAHVHAHAAHAA-----------------HAAHAH-AHHAEAFLGAAGGAGGN 366

  Fly    68 PTLHNLQNTRTGDSLSTTINT-------NQNQHGHQHLSGSNMYTSSQMEDKSKANK---YDEYS 122
            |  ::|.....||.|.....|       |:.:||.      .::||||:|:..||.|   |.:.|
  Fly   367 P--NSLLAAHGGDVLVGPGGTGPGGKKKNKRRHGR------TIFTSSQLEELEKAFKEAHYPDVS 423

  Fly   123 SRTLSNISDANTTPSANNFIT---QSQGIEWITAMNDIQNGAED--SHSSQGSISGDGHGGVNQL 182
            :|.|.::.    |..|.:.|.   |::..:|        ...|.  .||::.:..|        |
  Fly   424 ARELLSMK----TGLAEDRIQVWYQNRRAKW--------RKTEKCWGHSTKMAEYG--------L 468

  Fly   183 GGVFV-NGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYYETGSFKAGVIGGSK 246
            .|..| :..|||:.                               |:....|..|....::|..|
  Fly   469 YGAMVRHSLPLPET-------------------------------IIKSAKEDESVAPWLLGMHK 502

  Fly   247 PKVATPPVVDAIANYKRENPTMFAWEIRDRLLAEAICSQDNVP-SVSSINRIV-------RNKAA 303
            ..:....::.:..: .||.||.     .|...:.:..|..|.| |..||:|::       ...|.
  Fly   503 KSLEAAELLKSDES-DRETPTS-----DDTNTSYSAGSTHNSPISSFSISRLLFDAPPPAAGSAG 561

  Fly   304 EKAKHVHHHQQHHVSQSLGGGHIATESVDSSTGTIGEPQPPTSNSSANSVNTNVSASASVHASI- 367
            .|..|.|||  ||     .|.|                            :.:|.|.|..||.:
  Fly   562 GKGHHHHHH--HH-----KGHH----------------------------HAHVHAQAQAHAHML 591

  Fly   368 ---PTSGTDSVQVSVGHINANSNETTHINSTAEQRTTGYSINGILGIQHG----------HHSHN 419
               ........|....|.:.::.|    ||..:|:..|.......|...|          ||.:|
  Fly   592 LHHQQQQQQQQQQQQHHHHLHAAE----NSLQQQQVAGTGSGSGSGSGSGTGAGSTGPPAHHPYN 652

  Fly   420 NNNN----SSVNNNNNTESSCKRKRIEAHDENHDTNIHSDNDDGKRQRMSTYSGDQLYTNIWSGK 480
            ...:    ..:......:....:::.:.|...|..::|..:                :.|..:|
  Fly   653 QQQHLHHLQQLQQQQQQQQQQAQQQQQHHHHQHHHSVHHMH----------------HHNAAAG- 700

  Fly   481 WCIKDDHKLLAELGNLTASTGNCPATYYEASNGFSTTPISGSGATASGNDTSMLYDSITTISQTQ 545
                     .||.....|:.....|....|.|..:...::.:.|:||         :..||::::
  Fly   701 ---------YAEAAVAAAAAAAAVAAAANARNAAAAAAVAAASASAS---------AAVTIAESE 747

  Fly   546 S 546
            :
  Fly   748 A 748

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sv	NP_524633.3	PAX	175..299	CDD:128645	23/132 (17%)
Vsx1	NP_572232.2	Homeodomain	395..452	CDD:459649	19/74 (26%)