DRSC/TRiP Functional Genomics Resources

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Protein Alignment sv and otx2b

DIOPT Version :10

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_571326.1 Gene:otx2b / 30501 ZFINID:ZDB-GENE-980526-406 Length:289 Species:Danio rerio


Alignment Length:165 Identity:42/165 - (25%)
Similarity:64/165 - (38%) Gaps:46/165 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   692 NRRSNLNASTHPSSLIPLQPSGGSSLLNINPSENRSDVELNLSNNVGL---YSTP--TVLPSFNH 751
            |||:........      |.:||.:  .:.|::.:|......|:..|.   ::.|  |.:|:.:.
Zfish    88 NRRAKCRQQQQQ------QQNGGQN--KVRPAKKKSSPAREASSESGASGQFTPPSSTSVPAIST 144

  Fly   752 YSAGCS-----SVVPGSD----------YAYNPAYTQYGGAYGSYGYGTGSGLINSSYY--YESG 799
            .:|..|     |:.|.||          .:|...|||..|.  |.|| .||    :||:  .:.|
Zfish   145 TTAPVSIWSPASISPLSDPLSTSSSCMQRSYPMTYTQASGY--SQGY-AGS----TSYFGGMDCG 202

  Fly   800 QTQSPLTHDLRSPLVATRANSLASAASPGSGSACT 834
            ...:|:.|.|..|         .|..||.|.:|.|
Zfish   203 SYLTPMHHQLTGP---------GSTLSPMSSNAVT 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645
otx2bNP_571326.1 Homeodomain 39..94 CDD:459649 3/5 (60%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 93..142 10/56 (18%)
TF_Otx 153..234 CDD:427350 27/92 (29%)
Blue background indicates that the domain is not in the aligned region.

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