DRSC/TRiP Functional Genomics Resources

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Protein Alignment sv and rx3

DIOPT Version :10

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_571302.1 Gene:rx3 / 30474 ZFINID:ZDB-GENE-990415-238 Length:292 Species:Danio rerio


Alignment Length:431 Identity:71/431 - (16%)
Similarity:129/431 - (29%) Gaps:166/431 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   272 EIRDRLLAEAICSQDNVPSVSSINRIVRNKAAEKAKHVHHHQQHHVSQSLGGGHIATESVDSSTG 336
            ::.|||...|              |:||:..::...|                     |::|..|
Zfish    10 DMEDRLSPSA--------------RLVRSPGSQTRIH---------------------SIESILG 39

  Fly   337 TIGEPQPPTSNSSANSVNTNVSASASVHASIPTSGTDSVQVSVGHINANSNETTHINSTAEQRTT 401
            ..||                    ...|.:.| .|:........|::...:...|.:...  |:|
Zfish    40 FKGE--------------------TLFHPAFP-YGSGKTGKDTEHLSPKKDSNKHFDGVC--RST 81

  Fly   402 GYSINGILGIQHGHHSHNNNNNSSVNNNNNTESSCKRKRIE-AHDENHDTNIHSDNDDGKRQRMS 465
            ......:.....|..|.:.|.......|..|.::.:...:| |.:::|..:::|..:...:..: 
Zfish    82 VMVSPDLPDADGGKLSDDENPKKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNL- 145

  Fly   466 TYSGDQLYTNIW----SGKWCIKDDHKLLAELGNLTASTGNCPATYYEASNGFSTTPISGSGATA 526
                .::...:|    ..||  :...||                                     
Zfish   146 ----PEVRVQVWFQNRRAKW--RRQEKL------------------------------------- 167

  Fly   527 SGNDTSMLYDSITTISQTQSSIYT-PAIGP-SIGTGSLTPLVPISMHEMKLSANSIQ-------- 581
                      .:::|...:||:.: |..|| |:|:|  .||.|.....:..|::.:|        
Zfish   168 ----------EVSSIKLQESSMLSIPRSGPLSLGSG--LPLEPWLTGPISTSSSPLQSLPSFITP 220

  Fly   582 EQTVPPFYTALAFDGNYTSMTSLENCSSLVGQEHIVMPESSDSNTLCPISTRIVPDITETNSTRV 646
            :|.||..||...|..:.|...||         .||        ..:||                 
Zfish   221 QQAVPASYTPPQFLSSSTLNHSL---------PHI--------GAVCP----------------- 251

  Fly   647 KEPLTNSDGCSEDNNKEPEKSNSSQSSDHI-ASPHLHHIGE 686
              |...|....:.:.:|.:..|:|.:|..: |..|:..||:
Zfish   252 --PYQCSGFMDKFSLQEADPRNTSIASLRMKAKEHIQSIGK 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645 5/26 (19%)
rx3NP_571302.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..27 7/30 (23%)
Octapeptide motif 32..39 3/27 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 53..72 2/18 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 85..107 3/21 (14%)
Homeodomain 107..163 CDD:459649 9/62 (15%)
OAR 268..284 CDD:461067 4/15 (27%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 272..285 3/12 (25%)
Nuclear localization signal. /evidence=ECO:0000255 278..282 0/3 (0%)

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