DRSC/TRiP Functional Genomics Resources

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Protein Alignment sv and gsc

DIOPT Version :10

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_571092.1 Gene:gsc / 30212 ZFINID:ZDB-GENE-980528-2060 Length:240 Species:Danio rerio


Alignment Length:80 Identity:21/80 - (26%)
Similarity:30/80 - (37%) Gaps:21/80 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 LQHRILHPHILHSTQEETLNTSTGQLEHDSQHLQQHHLTHHQQQDVSPTLHNLQNTRTGDSLSTT 85
            |.||  :..::.|...|:|.|:.|    |...|..|         ..|...|||      |::..
Zfish    23 LLHR--NAPVVFSNLTESLYTAAG----DFNGLYSH---------TGPPAPNLQ------SVNGR 66

  Fly    86 INTNQNQHGHQHLSG 100
            |..|...:|..|:.|
Zfish    67 IGYNNYYYGQLHVQG 81

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645
gscNP_571092.1 Homeodomain 147..203 CDD:459649
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 199..240
Blue background indicates that the domain is not in the aligned region.

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