DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sv and sebox

DIOPT Version :9

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_001306981.1 Gene:sebox / 282666 ZFINID:ZDB-GENE-021206-4 Length:293 Species:Danio rerio


Alignment Length:142 Identity:29/142 - (20%)
Similarity:47/142 - (33%) Gaps:58/142 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 HDSQHLQQ-----HHLTHHQQQ--------------DVSPTLHNL-----QNTRT-GDSLSTTIN 87
            |...:|:|     ..|.||||.              .:||.|..:     :|:.| |||..::..
Zfish   138 HPDLNLEQSPEANKSLRHHQQSLIRQALNPWPQNRPPISPDLPEILQWANRNSETPGDSSFSSCP 202

  Fly    88 TNQNQHGHQHLSGS----------------------NMYTS-----------SQMEDKSKANKYD 119
            :.:.||...:.|.|                      .:|:|           |.:|:..:.....
Zfish   203 SERIQHPFPNQSSSVWQMNCFAAHPEGLKSYCTTSQALYSSVSVDQMIPAHPSSLEEALQRQALT 267

  Fly   120 EYSSRTLSNISD 131
            .|...:|.:|||
Zfish   268 HYPQTSLGDISD 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645
seboxNP_001306981.1 COG5576 13..159 CDD:227863 7/20 (35%)
Homeobox 61..112 CDD:278475
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 117..144 1/5 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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