DRSC/TRiP Functional Genomics Resources

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Protein Alignment sv and Otx1

DIOPT Version :10

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_037241.2 Gene:Otx1 / 25646 RGDID:3237 Length:355 Species:Rattus norvegicus


Alignment Length:169 Identity:49/169 - (28%)
Similarity:63/169 - (37%) Gaps:42/169 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   641 TNSTRVKE---PLTNSDGCSEDNNKEP---EKSNSSQSSDHIASPHLHHIGEEQLRGN---RRSN 696
            |.|..||:   |:..|.|........|   ..|.||.||...||.:........|.||   ..|:
  Rat   103 TKSRPVKKKSSPVRESSGSESSGQFTPPAVSSSASSSSSASSASANPAAAAAAGLGGNPVAAASS 167

  Fly   697 LNASTHPSSLIPLQPSGGSSLLNINPSENRSDVELNLSNNVGLYSTPTVLPSFNHYSAGC--SSV 759
            |:..|..|...|...|.||:..:::..|                  |...||    :|.|  .||
  Rat   168 LSTPTASSIWSPASISPGSAPASVSVPE------------------PLGAPS----NASCMQRSV 210

  Fly   760 VPGSDYA---YNPAYTQYGGAYGSYGYGTGSGLINSSYY 795
            ..|:..|   |..:|.| ||:||. ||...|    |||:
  Rat   211 AAGAATAAASYPMSYGQ-GGSYGQ-GYPAPS----SSYF 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645
Otx1NP_037241.2 Homeodomain 39..95 CDD:459649
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 92..144 13/40 (33%)
TF_Otx 178..274 CDD:427350 27/94 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..306
Blue background indicates that the domain is not in the aligned region.

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