DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sv and phx1

DIOPT Version :9

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_593776.1 Gene:phx1 / 2542405 PomBaseID:SPAC32A11.03c Length:942 Species:Schizosaccharomyces pombe


Alignment Length:1020 Identity:194/1020 - (19%)
Similarity:327/1020 - (32%) Gaps:344/1020 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 LHPHILHSTQEETL---NTSTGQLEHDS--------QHLQQHHLTHHQQQDVSPTLHNLQNTRTG 79
            ::.:|.:|.:..|:   |.|....:.||        .::|..|.|:.|         :||..:..
pombe    13 INDNINYSEKRPTMLPENLSLSNYDMDSFLGQFPSDNNMQLPHSTYEQ---------HLQGEQQN 68

  Fly    80 DSLSTTINTNQNQHGHQHLSGSNMYTSSQMEDKSKA------NKYDEYSSRTLSNISDANTTPSA 138
            .       ||.|....:.  ..|.....|.:.|..|      |.:|..:|..|:|.|     |..
pombe    69 P-------TNPNYFPPEF--DENKVDWKQEKPKPDAPSFADNNSFDNVNSSKLTNPS-----PVQ 119

  Fly   139 NNFI-TQSQGIEWITAMNDIQNGAEDSHSSQGSISGDGH-GGVNQLGGVFVNGRPLPDVVRQRIV 201
            .|.: ::|:      ..|..||...::.|.:.:.....| .|..:.||    ....|...:||:.
pombe   120 PNIVKSESE------PANSKQNEVVEATSVEKAKENVAHESGTPESGG----STSAPKSKKQRLT 174

  Fly   202 --ELAH------------NGVRPCDISRQLRVSHGCV----------SKILSRYYE--------- 233
              :||:            ..:|. .|.|:|.:....|          ||::||..|         
pombe   175 ADQLAYLLREFSKDTNPPPAIRE-KIGRELNIPERSVTIWFQNRRAKSKLISRRQEEERQRILRE 238

  Fly   234 -----------TGSFKAGVIGGSKPKVATPPVVDAIANYKRENPTMFAWEIRD-----------R 276
                       :.:|...|:..|    .|.|.|..||..::...|:.....|.           :
pombe   239 QRELDSLNQKVSQAFAHEVLSTS----PTSPYVGGIAANRQYANTLLPKPTRKTGNFYMKSGPMQ 299

  Fly   277 LLAEAICSQDNVPSVSSINRIVRNKAAEKAKHVHHHQQHHVS--------QSLGGGHIATESVDS 333
            ...|...::.::|...|::....|..:..|..|...:::..|        .|:.......||..|
pombe   300 SSMEPCIAESDIPIRQSLSSTYYNSLSPNAVPVSSQRKYSASSYSAIPNAMSVSNQAFDVESPPS 364

  Fly   334 STGT----IGEPQPPTSNSSANSVNTNVSASASVHASIPTSGTDSVQVSVGHINANSNETTHINS 394
            |..|    |..|||   .|...|....||.|:..:.....|...|.:.| |.:...:..|.|:.:
pombe   365 SYATPLTGIRMPQP---ESDLYSYPREVSPSSGGYRMFGHSKPSSYKAS-GPVRPPNMATGHMRT 425

  Fly   395 TAEQRTTGYSING--------ILGIQHGHHSHNNNNNSSVNNNNNTESSCKRKRIEAHDENHDTN 451
            ::|  .|.|....        ::|:.                          ||:.|..::    
pombe   426 SSE--PTSYDSEFYYFSCTLLVIGLW--------------------------KRLRASPQD---- 458

  Fly   452 IHSDNDDGKRQRMSTYSGDQ-----------LYTNIWSGKWCIKDDH------KLLAELGNLTAS 499
                       .|..||..:           :...|....:.|:..|      .||.|| :.|||
pombe   459 -----------LMCFYSPPKKLFAYLIQFQGIQYRIEYSFFVIESIHVFRVEEPLLNEL-SATAS 511

  Fly   500 TGNCPAT---YYEASNGFSTTPI------SGSGAT---ASGNDTS-MLYDSI----TTISQTQSS 547
            :.:.||.   :.:.....|..|:      .|.|..   ..||..| :|..|:    |::.|....
pombe   512 SRDKPAPNEYWLQMDIQLSVPPVFHMITSEGQGNCTDFTEGNQASEVLLHSLMGRATSMFQMLDR 576

  Fly   548 I--YTPAIGPSIG-TGSLTP---LVPISMHEMKLSANS--IQEQTVPPFYTALAFD-----GNYT 599
            :  .:|.:|..|. ...|.|   |.|...:::....:|  ...|...|....|:.|     ||.:
pombe   577 VRRASPELGSVIRLQKGLNPHQFLDPQWANQLPRQPDSSVFDHQGRNPPIQGLSHDTSSEYGNKS 641

  Fly   600 SMTSLENCSSLVGQ---EHIVMPESS-----DSNTLCPISTRI-VPDITETNSTRVKEPLTNSDG 655
            ....|.:.|:...|   :|::.|:::     .:.::.||:..: ..::.|.:|||:         
pombe   642 QFKRLRSTSTPARQDLAQHLLPPKTNTEGLMHAQSVSPITQAMKSANVLEGSSTRL--------- 697

  Fly   656 CSEDNNKEPEKSNSSQSSDHIASPHLHH-----IGEEQLRGNRRSNLN--------------AST 701
                |:.||.          ::|.:.||     :...|......||::              ||.
pombe   698 ----NSYEPS----------VSSAYPHHNLALNLDNTQFGELGTSNISYPLSAPSDVGSLPRASN 748

  Fly   702 HPS-------------------SLIPLQPSGG----SSLLNINPS-----ENRSDVELNLSNNVG 738
            .||                   :..|...:||    |..:|.|.|     :||.      ...:|
pombe   749 SPSRPVMHPNTQGINTEIKDMAAQFPNSQTGGLTPNSWSMNTNVSVPFTTQNRE------FGGIG 807

  Fly   739 LYSTPTVL--PS-------FNHYSAGCSSVVPGSDYAYNPAYTQYGGAYGSYGYGTGSGLINSSY 794
            ..|..|.:  ||       |...|....:.||                  |||:...|    ...
pombe   808 SSSISTTMNAPSQQLSQVPFGDVSLATENSVP------------------SYGFEVPS----EES 850

  Fly   795 YYESGQTQSPLTHDLRSPLVATRANSLASAASPGSGSACTKSESS 839
            .|...:|.|.::..: :|.:..:..|:..|:|.|..|...:..||
pombe   851 VYAQARTNSSVSAGV-APRLFIQTPSIPLASSAGQDSNLIEKSSS 894

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645 32/179 (18%)
phx1NP_593776.1 COG5576 116..272 CDD:227863 34/175 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.900

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