DRSC/TRiP Functional Genomics Resources

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Protein Alignment sv and Pax3

DIOPT Version :10

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_001152992.1 Gene:Pax3 / 18505 MGIID:97487 Length:484 Species:Mus musculus


Alignment Length:635 Identity:176/635 - (27%)
Similarity:253/635 - (39%) Gaps:203/635 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYYETGSFKA 239
            |.|.||||||||:||||||:.:|.:|||:||:|:|||.||||||||||||||||.||.||||.:.
Mouse    34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRP 98

  Fly   240 GVIGGSKPK-VATPPVVDAIANYKRENPTMFAWEIRDRLLAEAICSQDNVPSVSSINRIVRNKAA 303
            |.||||||| |.||.|...|..||||||.||:|||||:||.:|:|.::.|||||||:||:|:|  
Mouse    99 GAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSK-- 161

  Fly   304 EKAKHVHHHQQHHVSQSLGGGHIATESVDSSTGTIGEPQPPTSNSSANSVNTNVSASASVHASIP 368
                             .|.|.  .|..|.......|.:....:|        :....|..||.|
Mouse   162 -----------------FGKGE--EEEADLERKEAEESEKKAKHS--------IDGILSERASAP 199

  Fly   369 TSGTDSVQVSVGHINANSNETTHINSTAE------QRTTGYSINGILGIQHGHHSHNNNNNSSVN 427
                            .|:|.:.|:|..:      ||                            
Mouse   200 ----------------QSDEGSDIDSEPDLPLKRKQR---------------------------- 220

  Fly   428 NNNNTESSCKRKRIE-AHDENHDTNIHSDNDDGKRQRMSTYSGDQLYTNIW----SGKWCIKDDH 487
            .:..|.::.:.:.:| |.:..|..:|::..:..:|.:::     :....:|    ..:|..:...
Mouse   221 RSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLT-----EARVQVWFSNRRARWRKQAGA 280

  Fly   488 KLLAELGNLTASTGNCPATYYEASNGFSTTPISGSGATASGNDTSMLYDSI-TTISQTQSSIYTP 551
            ..|....:|.  .|..|.|      ...|.|      |...::||....|| ..:|...|:::.|
Mouse   281 NQLMAFNHLI--PGGFPPT------AMPTLP------TYQLSETSYQPTSIPQAVSDPSSTVHRP 331

  Fly   552 AIGPSIGTGSLTPLVPISMHEMKLSANSIQEQTVPPFYTALAFDGNYTSMTSLENCSSLVGQEHI 616
                       .||.|.::|:..:.:|:.....    |...:....::|.|     .|.|     
Mouse   332 -----------QPLPPSTVHQSTIPSNADSSSA----YCLPSTRHGFSSYT-----DSFV----- 371

  Fly   617 VMPESSDSNTLCPISTRIVPDITETNSTRVKEPLTNSDGCSEDNNKEPEKSNSSQSSDHIASPHL 681
              |.|..||   |::    |.|....|.:|...|||..|...    :|:       :|:..||  
Mouse   372 --PPSGPSN---PMN----PTIGNGLSPQVMGLLTNHGGVPH----QPQ-------TDYALSP-- 414

  Fly   682 HHIGEEQLRGNRRSNLNASTHPSSLIPLQPSGGSSLLNINPSENRSDVELNLSNNVGLYSTPTVL 746
                   |.|.                |:|:...|.......|:..:|:          |.||..
Mouse   415 -------LTGG----------------LEPTTTVSASCSQRLEHMKNVD----------SLPTSQ 446

  Fly   747 PSFNHYSAGCSSVVPGSDYAYNPAYTQYGGAYGSYGYGTGSGLINSSYYY 796
            |.       |......:.|:.:|.   .|..||.||        .|:::|
Mouse   447 PY-------CPPTYSTAGYSMDPV---TGYQYGQYG--------QSAFHY 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645 87/124 (70%)
Pax3NP_001152992.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:128645 87/124 (70%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93 42/55 (76%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161 29/47 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 16/116 (14%)
Homeodomain 220..276 CDD:459649 9/88 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 12/52 (23%)
Pax7 347..391 CDD:403540 14/66 (21%)
Blue background indicates that the domain is not in the aligned region.

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