DRSC/TRiP Functional Genomics Resources

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Protein Alignment sv and Pax1

DIOPT Version :10

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:XP_006498974.1 Gene:Pax1 / 18503 MGIID:97485 Length:534 Species:Mus musculus


Alignment Length:414 Identity:142/414 - (34%)
Similarity:186/414 - (44%) Gaps:107/414 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYYETGSFKAG 240
            :|.|||||||||||||||:.:|.||||||..|:||||||||||||||||||||:||.||||...|
Mouse   178 YGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPG 242

  Fly   241 VIGGSKPKVATPPVVDAIANYKRENPTMFAWEIRDRLLAEAICSQDNVPSVSSINRIVRNKAAEK 305
            .||||||:|.||.||..|.:||:.:|.:|||||||||||:.:|.:.||||||||:||:|||....
Mouse   243 AIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGSL 307

  Fly   306 AKHVHHH--QQHHVSQSLGGGHIATESVDSSTGTIGEPQPPTSNSSANSVNTNVSASASVHASIP 368
            |:...:.  :|.....:|...||.....         |.|.:...:....:..|..||. |.|||
Mouse   308 AQPGPYEASKQPPPQPALPYNHIYQYPY---------PSPVSPTGTKMGTHPGVPGSAG-HVSIP 362

  Fly   369 TSGTDSVQVSVGHINANSNETTHINSTAEQRTTGYSINGILGIQHGHHSHNNNNNSSVNN----N 429
            .|...:..||         ....|.:..||  ||    .:.|.:...:|....:.:.||.    .
Mouse   363 RSWPSAHSVS---------NILGIRTFMEQ--TG----ALAGSEGAAYSPKMEDWAGVNRAAFPT 412

  Fly   430 NNTESSCKRKRIEAHDENHDTNIHSDNDDGKRQRMSTYSGDQLYTNIWSGKWCIKDDHKLLAELG 494
            :...:..::..:||                                          |.|......
Mouse   413 SPAVNGLEKPALEA------------------------------------------DIKYTQSAS 435

  Fly   495 NLTASTGNCPATYYEASN--GFSTTPISGSGATASGNDTSMLYDSITTISQTQSSIYTPAIGPSI 557
            :|:|..|..||..|.|||  |..:.|.:|                          ..:|  ||..
Mouse   436 SLSAVGGFLPACAYPASNQHGVYSAPAAG--------------------------YLSP--GPPW 472

  Fly   558 GTGSLTPLVP----ISMHEMKLSA 577
            ......||.|    :::|..:|:|
Mouse   473 PPAQAPPLTPHGAGVAVHGGELAA 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645 88/122 (72%)
Pax1XP_006498974.1 PAX 177..304 CDD:238076 90/125 (72%)

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