Protein Alignment sv and pax-3

DIOPT Version :10

• Sequence 1: NP_524633.3
• Gene: sv / 43825
• FlyBaseID: FBgn0005561
• Length: 844
• Species: Drosophila melanogaster
• Sequence 2: NP_496189.2
• Gene: pax-3 / 185022
• WormBaseID: WBGene00003939
• Length: 308
• Species: Caenorhabditis elegans
• Alignment Length: 237
• Identity: 87/237 - (36%)
• Similarity: 124/237 - (52%)
• Gaps: 20/237 - (8%)

  Fly   175 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYYETGSFKA 239
            |.|.||||||||:||||||..||..|:.:|..|::||.|||||:||||.|||||:||.||||...
 Worm    13 GQGRVNQLGGVFINGRPLPIHVRHAIISMAKKGIKPCHISRQLKVSHGAVSKILNRYAETGSISP 77

  Fly   240 GVIGGS-KPKVATPPVVDAIANYKRENPTMFAWEIRDRLLAEAICSQDNVPSVSSINRIVRNKAA 303
            |.|||| :.::....|...|.....|||.|.|.|:||.|:.:.||::.|.|:|.:|.|::.||..
 Worm    78 GQIGGSPRARLTVQAVEKEILIACDENPQMSAAELRDWLIHKDICTKGNAPTVPAIKRLIGNKGV 142

  Fly   304 EKAKHVHHHQQHHVSQSLGGGHIATESVDSSTG-TIGEPQPPTSNSSANSVNTNVSASASVHASI 367
            ...|.:...:..:             |:||..| :|.|....:|:....|..:|.::|.....|.
 Worm   143 GVPKKMERKRLSY-------------SIDSILGISIDECSKSSSDDEEGSSPSNDASSRRNRTSF 194

  Fly   368 PTSGTDSVQ-----VSVGHINANSNETTHINSTAEQRTTGYS 404
            .....|.::     .:..|.||..:.:.....:.|:..|.:|
 Worm   195 TAEQLDVLENAFRADTYPHANARESISKETGLSEEKIMTWFS 236

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sv	NP_524633.3	PAX	175..299	CDD:128645	66/124 (53%)
pax-3	NP_496189.2	PAX	13..141	CDD:238076	67/127 (53%)
		Homeodomain	188..244	CDD:459649	8/49 (16%)