DRSC/TRiP Functional Genomics Resources

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Protein Alignment sv and CRX

DIOPT Version :10

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_000545.1 Gene:CRX / 1406 HGNCID:2383 Length:299 Species:Homo sapiens


Alignment Length:166 Identity:34/166 - (20%)
Similarity:56/166 - (33%) Gaps:55/166 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   710 QPSGGSSLLNINPSENRSDVELNLSNNV-----GL---YSTP---------TVLPSFNHYSAGCS 757
            ||.||.:  ...|::.::......|.:|     |:   ||.|         |.:.:.:.:|....
Human   106 QPPGGQA--KARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATVSIWSPASE 168

  Fly   758 SVVPGSD-------------------YAYNPAYTQYGGAYGSYGYGTGSGLINSSYYYESGQTQS 803
            |.:|.:.                   ||...|:.....||||          .|||:.......|
Human   169 SPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGS----------PSSYFSGLDPYLS 223

  Fly   804 PLTHDLRSPLVATRANSLASAASPGSGSACTKSESS 839
            |:...|..|       :|:..:.|..|.:..:|.:|
Human   224 PMVPQLGGP-------ALSPLSGPSVGPSLAQSPTS 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645
CRXNP_000545.1 Homeodomain 40..93 CDD:459649
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 93..155 11/50 (22%)
TF_Otx 164..249 CDD:427350 20/101 (20%)
Blue background indicates that the domain is not in the aligned region.

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