DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sv and arx

DIOPT Version :10

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:XP_002933659.1 Gene:arx / 100486727 XenbaseID:XB-GENE-483940 Length:536 Species:Xenopus tropicalis


Alignment Length:418 Identity:79/418 - (18%)
Similarity:131/418 - (31%) Gaps:134/418 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   381 HINANSNETTHINSTAEQRTTGYSINGILGIQHGHHSHNNNNNSSVNNNNNTESSCKRKRIEAHD 445
            |....::|.....|.:....:.|.|:.|||                     ..|.||.:.:.|  
 Frog     4 HYPEETSERPECKSKSPTLLSSYCIDSILG---------------------RRSPCKMRLLGA-- 45

  Fly   446 ENHDTNIHSDNDDGKRQRMSTYSGDQLYTNIWSGKWCIKDDHKLLAELGNLTASTGNCPATYYEA 510
            ::..:..|..:.|      .|..|..      .|....:.|..|..:|..|..            
 Frog    46 QSLPSLAHRLDPD------KTLEGSP------KGNAAFEADLHLPPKLRRLYG------------ 86

  Fly   511 SNGFSTTPISGSG-----ATA---SGNDTSMLYDSITTISQTQSSIYTPAIGPSIGTGSLTPLVP 567
                   |:.|||     |.|   ||...|...|.|..:.               |.|..|    
 Frog    87 -------PVGGSGRIHLQAVADARSGVPRSEKTDRILLLG---------------GAGENT---- 125

  Fly   568 ISMHEMKLSANSIQEQTVPPFYTALAFDGNYTSMTSLENCSSLVGQEHIVMPESSDSNTLCPIST 632
            ...|.:|:|    |...|     :::...:|.     ||.:.|:.:||  .||.....:...|.|
 Frog   126 WDNHSLKIS----QAPQV-----SISRSKSYR-----ENSAPLLREEH--SPEGLLQQSQQQIQT 174

  Fly   633 RIVPDITE--------TNSTRVKEPLTNSDGCSEDNNKEPEKSNSSQSSDHIASPHLHHIGEEQL 689
            ......|.        :.|.|.::.....|...|:..:|.:::|...:.::.::|:..|:.|:| 
 Frog   175 SATTACTSLQDRLGALSQSPRDEDDDDEEDEDEEEEEEEEDEANKQHNPNNSSNPNRAHLQEQQ- 238

  Fly   690 RGNRRSNLNASTHP-----SSLIPLQPSGGSSLLNINPSENRSDVELNLSNNVGLYSTPTVLPSF 749
                        ||     .|.....|.|..:...::|.|   ::.|:.|:..|.....:|.   
 Frog   239 ------------HPQFQSQQSQQQQPPPGCGTDAELSPKE---ELMLHSSDADGKDGEDSVC--- 285

  Fly   750 NHYSAGCSS---VVPGSDYAYNPAYTQY 774
              .|||..|   ::......|...:|.|
 Frog   286 --LSAGSDSEEGMLKRKQRRYRTTFTSY 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645
arxXP_002933659.1 Homeodomain 302..358 CDD:459649 3/10 (30%)
OAR 500..518 CDD:461067
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.